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Publications 2025

(in alphabetical order; latest publications in red)

1. Kirbis, A., Rahmatpour, N., Dong, S., Yu, J., Waser, L., Huang, H., van Gessel, N., Waller, M., Reski, R., Lang, D., Rensing, S.A., Temsch, E.M., Wegrzyn, J.L., Goffinet, B., Liu, Y., and Szovenyi, P. (2025)
   Comparative analysis using a chromosome-scale genome assembly for Funaria hygrometrica suggests greater collinearity in mosses than in seed plants.
   Commun. Biol. 8: 330. [PubMed]
2. Milferstaedt, S.W.L., Joest, M., Bohlender, L.L., Hoernstein, S.N.W., Ozdemir, B., Decker, E.L., van der Does, C., and Reski, R. (2025)
   Differential GTP-dependent in-vitro polymerization of recombinant Physcomitrella FtsZ proteins.
   Sci Rep. 15: 3095. [PubMed]
3. Xiong, F., Zhang, Z., Gong, W., Hermann, M., Bak, D.T., Garbsch, F., and Laux, T. (2025)
   Integration of basal and apical embryo lineage regulators controls F-actin cable integrity and zygote asymmetry in Arabidopsis.
   Proc. Natl. Acad. Sci. U. S. A. 122: e2402720122. [PubMed]

Publications 2024

(in alphabetical order; latest publications in red)

1. Cai, X., Zhang, H., Mu, C., Chen, Y., He, C., Liu, M., Laux, T., and Pi, L. (2024)
   A mobile miR160-triggered transcriptional axis controls root stem cell niche maintenance and regeneration in Arabidopsis.
   Dev Cell, doi: 10.1016/j.devcel.2024.10.006. [PubMed]
2. Carneros, E., Berenguer, E., Perez-Perez, Y., Pandey, S., Welsch, R., Palme, K., Gil, C., Martinez, A., and Testillano, P.S. (2024)
   Small molecule inhibitors of human LRRK2 enhance in vitro embryogenesis and microcallus formation for plant regeneration of crop and model species.
   J Plant Physiol. 303: 154334. [PubMed]
3. Chen, H., Xiong, F., Wangler, A.M., Bischoff, T., Wang, K., Miao, Y., Slane, D., Schwab, R., Laux, T., and Bayer, M. (2024)
   Phosphorylation-dependent activation of the bHLH transcription factor ICE1/SCRM promotes polarization of the Arabidopsis zygote.
   New Phytol., doi: 10.1111/nph.20265. [PubMed]
4. Cosenza-Contreras, M., Seredynska, A., Vogele, D., Pinter, N., Brombacher, E., Cueto, R.F., Dinh, T.J., Bernhard, P., Rogg, M., Liu, J., Willems, P., Stael, S., Huesgen, P.F., Kuehn, E.W., Kreutz, C., Schell, C., and Schilling, O. (2024)
   TermineR: Extracting information on endogenous proteolytic processing from shotgun proteomics data.
   Proteomics. 24: e2300491. [PubMed]
5. Gong, W., Bak, D.T., Wendrich, J.R., Weijers, D., and Laux, T. (2024)
   CDC48A, an interactor of WOX2, is required for embryonic patterning in Arabidopsis thaliana.
   Plant Cell Rep. 43: 174. [PubMed]
6. Guan, Y., Gajewska, J., Sobieszczuk-Nowicka, E., Floryszak-Wieczorek, J., Hartman, S., and Arasimowicz-Jelonek, M. (2024)
   The effect of nitrosative stress on histone H3 and H4 acetylation in Phytophthora infestans life cycle.
   Plant Physiol. Biochem. 216: 109129. [PubMed]
7. Han, Y., Hammerl, J., Flemming, F.E., Schuergers, N., and Wilde, A. (2024)
   A cyanobacterial chemotaxis-like system controls phototactic orientation via phosphorylation of two antagonistic response regulators.
   Microlife 5: uqae012. [PubMed]
8. Hess, W.R. and Hiltbrunner, A. (2024)
   Take your sunscreen: plant photoreceptor systems in Serritaenia testaceovaginata.
   J. Exp. Bot. 75: 3206–3208. [PubMed]
9. Hess, W.R., Wilde, A., and Mullineaux, C.W. (2024)
   Does mRNA targeting explain gene retention in chloroplasts?
   Trends Plant Sci., doi: 10.1016/j.tplants.2024.09.017. [PubMed]
10. Hoernstein, S.N.W., Schlosser, A., Fiedler, K., van Gessel, N., Igloi, G.L., Lang, D., and Reski, R. (2024)
    A snapshot of the Physcomitrella N-terminome reveals N-terminal methylation of organellar proteins.
    Plant Cell Rep. 43: 250. [PubMed]
11. Hoffmann, U.A., Lichtenberg, E., Rogh, S.N., Bilger, R., Reimann, V., Heyl, F., Backofen, R., Steglich, C., Hess, W.R., and Wilde, A. (2024)
    The role of the 5' sensing function of ribonuclease E in cyanobacteria.
    RNA Biol. 21: 1–18. [PubMed]
12. Jaillais, Y., Bayer, E., Bergmann, D.C., Botella, M.A., Boutte, Y., Bozkurt, T.O., Caillaud, M.C., Germain, V., Grossmann, G., Heilmann, I., Hemsley, P.A., Kirchhelle, C., Martiniere, A., Miao, Y., Mongrand, S., Muller, S., Noack, L.C., Oda, Y., Ott, T., Pan, X., Pleskot, R., Potocky, M., Robert, S., Rodriguez, C.S., Simon-Plas, F., Russinova, E., Van Damme, D., Van Norman, J.M., Weijers, D., Yalovsky, S., Yang, Z., Zelazny, E., and Gronnier, J. (2024)
    Guidelines for naming and studying plasma membrane domains in plants.
    Nat. Plants 10: 1172–1183. [PubMed]
13. Jeong, S., Schutz, V., Demir, F., Preusche, M., Huesgen, P., Bigler, L., Kovacic, F., Gutbrod, K., Dormann, P., and Schulz, M. (2024)
    Cyclic Isothiocyanate Goitrin Impairs Lotus japonicus Nodulation, Affects the Proteomes of Nodules and Free Mesorhizobium loti, and Induces the Formation of Caffeic Acid Derivatives in Bacterial Cultures.
    Plants (Basel) 13: 2897. [PubMed]
14. Ji, H. and Ragni, L. (2024)
    Plant growth: The heavy matter of weight-induced plant stem thickening.
    Curr. Biol. 34: R871-R873. [PubMed]
15. Knosp, S., Kriegshauser, L., Tatsumi, K., Malherbe, L., Erhardt, M., Wiedemann, G., Bakan, B., Kohchi, T., Reski, R., and Renault, H. (2024)
    An ancient role for CYP73 monooxygenases in phenylpropanoid biosynthesis and embryophyte development.
    EMBO J., doi: 10.1038/s44318-024-00181-7. [PubMed]
16. Klose, C. and Hiltbrunner, A. (2024)
    Measurement of phytochrome B thermal reversion Rates In Vivo.
    Methods Mol. Biol. 2795: 85–93. [PubMed]
17. Kobler, C., Schmelling, N.M., Wiegard, A., Pawlowski, A., Pattanayak, G.K., Spat, P., Scheurer, N.M., Sebastian, K.N., Stirba, F.P., Berwanger, L.C., Kolkhof, P., Macek, B., Rust, M.J., Axmann, I.M., and Wilde, A. (2024)
    Two KaiABC systems control circadian oscillations in one cyanobacterium.
    Nat Commun. 15: 7674. [PubMed]
18. Lee, T., Orvosova, M., Batzenschlager, M., Bueno Batista, M., Bailey, P.C., Mohd-Radzman, N.A., Gurzadyan, A., Stuer, N., Mysore, K.S., Wen, J., Ott, T., Oldroyd, G.E.D., and Schiessl, K. (2024)
    Light-sensitive short hypocotyl genes confer symbiotic nodule identity in the legume Medicago truncatula.
    Curr Biol., doi: 10.1016/j.cub.2024.01.018. [PubMed]
19. Mooney, B.C., Doorly, C.M., Mantz, M., Garcia, P., Huesgen, P.F., and Graciet, E. (2024)
    Hypoxia represses pattern-triggered immune responses in Arabidopsis.
    Plant Physiol., doi: 10.1093/plphys/kiae432. [PubMed]
20. Mantovani, O., Haffner, M., Walke, P., Elshereef, A.A., Wagner, B., Petras, D., Forchhammer, K., Selim, K.A., and Hagemann, M. (2024)
    The redox-sensitive R-loop of the carbon control protein SbtB contributes to the regulation of the cyanobacterial CCM.
    Sci. Rep. 14: 7885. [PubMed]
21. Maric, A. (2024)
    The underground tango: How ethylene and auxin interact to regulate cereal root angle.
    Plant Physiol., doi: 10.1093/plphys/kiae194. [PubMed]
22. Maric, A. (2024)
    Memories that last: Epigenetic regulation of cold stress response prepares plants for subsequent stress events.
    Plant Physiol., doi: 10.1093/plphys/kiae579. [PubMed]
23. Munoz, C., Schröder, K., Henes, B., Hubert, J., Leblond, S., Poigny, S., Reski, R., and Wandrey, F. (2024)
    Phytochemical exploration of ceruchinol in moss: a multidisciplinary study on biotechnological cultivation of Physcomitrium patens (Hedw.) Mitt.
    Appl. Sci. 14: 1274. doi: 10.1016/j.cub.2024.01.018.
24. Niederau, P.A., Egle, P., Willig, S., Parsons, J., Hoernstein, S.N.W., Decker, E.L., and Reski, R. (2024)
    Multifactorial analysis of terminator performance on heterologous gene expression in Physcomitrella.
    Plant Cell Rep. 43: 43. [PubMed]
25. Noura, S., Kleine-Vehn, J., and Waidmann, S. (2024)
    Organ-specific microsomes from dark-grown hypocotyls of Arabidopsis thaliana.
    Methods Mol. Biol. 2772: 383–389. [PubMed]
26. Peter, C., Adam, E., Klose, C., Grezal, G., Hajdu, A., Steinbach, G., Kozma-Bognar, L., Silhavy, D., Nagy, F., and Viczian, A. (2024)
    Phytochrome C and low temperature promote the protein accumulation and red light signaling of phytochrome D.
    Plant Cell Physiol., doi: 10.1093/pcp/pcae089. [PubMed]
27. Rempfer, C., Hoernstein, S.N.W, van Gessel, N., Graf, A.W., Spiegelhalder, R.P., Bertolini, A., Bohlender, L.L., Parsons, J., Decker, E.L., and Reski R. (2024)
    Differential prolyl hydroxylation by six Physcomitrella prolyl-4 hydroxylases.
    Comput. Struct. Biotechnol. J. 23: 2580–2594. [PubMed]
Renziehausen, T., Chaudhury, R., Hartman, S., Mustroph, A., and Schmidt-Schippers, R.R. (2024)
A mechanistic integration of hypoxia signaling with energy, redox and hormonal cues.
Plant Physiol., doi: 10.1093/plphys/kiae596. [PubMed]
28. Rossling, A.K., Dunser, K., Liu, C., Lauw, S., Rodriguez-Franco, M., Kalmbach, L., Barbez, E., and Kleine-Vehn, J. (2024)
    Pectin methylesterase activity is required for RALF1 peptide signalling output.
    Elife. 13 [PubMed]
29. Schippers, J.H.M., von Bongartz, K., Laritzki, L., Frohn, S., Frings, S., Renziehausen, T., Augstein, F., Winkels, K., Sprangers, K., Sasidharan, R., Vertommen, D., Van Breusegem, F., Hartman, S., Beemster, G.T.S., Mhamdi, A., van Dongen, J.T., and Schmidt-Schippers, R.R. (2024)
    ERFVII-controlled hypoxia responses are in part facilitated by MEDIATOR SUBUNIT 25 in Arabidopsis thaliana.
    Plant J., doi: 10.1111/tpj.17018. [PubMed]
30. Selim, K.A. and Alva, V. (2024)
    PII-like signaling proteins: a new paradigm in orchestrating cellular homeostasis.
    Curr. Opin. Microbiol. 79: 102453. [PubMed]
31. Shang, W., Lichtenberg, E., Mlesnita, A.M., Wilde, A., and Koch, H.G. (2024)
    The contribution of mRNA targeting to spatial protein localization in bacteria.
    FEBS J., doi: 10.1111/febs.17054. [PubMed]
32. Sharma, M., Friedrich, T., Oluoch, P., Zhang, N., Peruzzo, F., Jha, V., Pi, L., Groot, E.P., Kornet, N., Follo, M., Aichinger, E., Fleck, C., and Laux, T. (2024)
    A coherent feed-forward loop in the Arabidopsis root stem cell organizer regulates auxin biosynthesis and columella stem cell maintenance.
    Nat. Plants 10: 1737–1748. [PubMed]
33. Stockert, F., Baeta, H., and Huesgen, P.F. (2024)
    Analysis of mitochondrial targeting signal cleavage and protein processing by mass spectrometry.
    Methods Enzymol. 706: 215–242. [PubMed]
34. Van Brenk, J.B., Courbier, S., Kleijweg, C.L., Verdonk, J.C., and Marcelis, L.F.M. (2024)
    Paradise by the far-red light: Far-red and red:blue ratios independently affect yield, pigments, and carbohydrate production in lettuce, Lactuca sativa.
    Front. Plant Sci. 15: 1383100. [PubMed]
35. van Midden, K.P., Mantz, M., Fonovic, M., Gazvoda, M., Svete, J., Huesgen, P.F., van der Hoorn, R.A.L., and Klemencic, M. (2024)
    Mechanistic insights into CrCEP1: A dual-function cysteine protease with endo- and transpeptidase activity.
    Int. J. Biol. Macromol. 271: 132505. [PubMed]
36. Zhang, G. and Ott, T. (2024)
    Cellular morphodynamics and signaling around the transcellular passage cleft during rhizobial infections of legume roots.
    Curr. Opin. Cell Biol. 91: 102436. [PubMed]
37. Zhang, N., Bitterli, P., Oluoch, P., Hermann, M., Aichinger, E., Groot, E.P., and Laux, T. (2024)
    Deciphering the molecular logic of WOX5 function in the root stem cell organizer.
    EMBO J., doi: 10.1038/s44318-024-00302-2. [PubMed]

Publications 2023

(in alphabetical order; latest publications in red)

1. Barbez, E. (2023)
   Orchestrating pH levels in plants.
   Elife 12 [PubMed]
2. Binci, F., Offer, E., Crosino, A., Sciascia, I., Kleine-Vehn, J., Genre, A., Giovannetti, M., and Navazio, L. (2023)
   Spatially and temporally distinct Ca²⁺ changes in Lotus japonicus roots orient fungal-triggered signalling pathways towards symbiosis or immunity.
   J. Exp. Bot., doi: 10.1093/jxb/erad360. [PubMed]
3. Brillada, C. and Trujillo, M. (2023)
   Identification and Characterization of Physiological Pairing of E2 Ubiquitin-Conjugating Enzymes and E3 Ubiquitin Ligases.
   Methods Mol. Biol. 2581: 13–29. [PubMed]
4. Bourdon, M., Lyczakowski, J.J., Cresswell, R., Amsbury, S., Vilaplana, F., Le Guen, M.J., Follain, N., Wightman, R., Su, C., Alatorre-Cobos, F., Ritter, M., Liszka, A., Terrett, O.M., Yadav, S.R., Vaten, A., Nieminen, K., Eswaran, G., Alonso-Serra, J., Muller, K.H., Iuga, D., Miskolczi, P.C., Kalmbach, L., Otero, S., Mahonen, A.P., Bhalerao, R., Bulone, V., Mansfield, S.D., Hill, S., Burgert, I., Beaugrand, J., Benitez-Alfonso, Y., Dupree, R., Dupree, P., and Helariutta, Y. (2023)
   Ectopic callose deposition into woody biomass modulates the nano-architecture of macrofibrils.
   Nat. Plants 9: 1530–1546. [PubMed]
5. Courbier, S. (2023)
   Stairway to have N: Target of Rapamycin as a gatekeeper of nitrogen metabolism in Arabidopsis thaliana.
   Plant Physiol., doi: 10.1093/plphys/kiad277. [PubMed]
6. Daniel, K. and Hartman, S. (2023)
   How plant roots respond to waterlogging.
   J. Exp. Bot., doi: 10.1093/jxb/erad332. [PubMed]
7. Enomoto, G., Wallner, T., and Wilde, A. (2023)
   Control of light-dependent behaviour in cyanobacteria by the second messenger cyclic di-GMP.
   Microlife 4: uqad019. [PubMed]
8. Farkas, S. and Kleine-Vehn, J. (2023)
   Gravitropism: The LAZY way of intracellular hitchhiking.
   Curr Biol. 33: R1224-R1226. [PubMed]
9. Gao, M., Lu, Y., Geng, F., Klose, C., Staudt, A.M., Huang, H., Nguyen, D., Lan, H., Lu, H., Mockler, T.C., Nusinow, D.A., Hiltbrunner, A., Schafer, E., Wigge, P.A., and Jaeger, K.E. (2023)
   Phytochromes transmit photoperiod information via the evening complex in Brachypodium.
   Genome Biol. 24: 256. [PubMed]
10. Hoernstein, S.N.W., Ozdemir, B., van Gessel, N., Miniera, A.A., Rogalla von Bieberstein, B., Nilges, L., Schweikert Farinha, J., Komoll, R., Glauz, S., Weckerle, T., Scherzinger, F., Rodriguez-Franco, M., Muller-Schussele, S.J., and Reski, R. (2023)
    A deeply conserved protease, acylamino acid-releasing enzyme (AARE), acts in ageing in Physcomitrella and Arabidopsis.
    Commun. Biol. 6: 61. [PubMed]
11. Hou, X., Alagoz, Y., Welsch, R., Mortimer, M.D., Pogson, B.J., and Cazzonelli, C.I. (2023)
    Reducing PHYTOENE SYNTHASE activity fine-tunes the abundance of a cis-carotene-derived signal that regulates the PIF3/HY5 module and plastid biogenesis.
    J. Exp. Bot., doi: 10.1093/jxb/erad443. [PubMed]
12. Hu, R., ..., Decker, E.L., van Gessel, N., Renault, H., Wiedemann, G. Horst, N.A, Reski, R., and He, Y. (2023).
    Adaptive evolution of the enigmatic Takakia now facing climate change in Tibet.
    Cell 186: 3558-3576.e17. [PubMed]
13. Kaltenbrunner, A., Reimann, V., Hoffmann, U.A., Aoyagi, T., Sakata, M., Nimura-Matsune, K., Watanabe, S., Steglich, C., Wilde, A., and Hess, W.R. (2023)
    Regulation of pSYSA defense plasmid copy number in Synechocystis through RNase E and a highly transcribed asRNA.
    Front. Microbiol. 14: 1112307. [PubMed]
14. Kircher, S. and Schopfer, P. (2023)
    Photosynthetic sucrose drives the lateral root clock in Arabidopsis seedlings.
    Curr Biol., doi: 10.1016/j.cub.2023.04.061. [PubMed]
15. Koselski, M., Hoernstein, S.N.W., Wasko, P., Reski, R., and Trebacz, K. (2023)
    Long-distance electrical and calcium signals evoked by hydrogen peroxide in Physcomitrella.
    Plant Cell Physiol., doi: 10.1093/pcp/pcad051. [PubMed]
16. Lace, B., Su, C., Invernot Perez, D., Rodriguez-Franco, M., Vernie, T., Batzenschlager, M., Egli, S., Liu, C.W., and Ott, T. (2023)
    RPG acts as a central determinant for infectosome formation and cellular polarization during intracellular rhizobial infections.
    Elife 12 [PubMed]
17. Lange, P.F., Schilling, O., and Huesgen, P.F. (2023)
    Positional proteomics: is the technology ready to study clinical cohorts?
    Expert Rev. Proteomics: 1–10., doi: 10.1080/14789450.2023.2272046. [PubMed]
18. Lu, L., Holt, A., Chen, X., Liu, Y., Knauer, S., Tucker, E.J., Sarkar, A.K., Hao, Z., Roodbarkelari, F., Shi, J., Chen, J., and Laux, T. (2023)
    miR394 enhances WUSCHEL-induced somatic embryogenesis in Arabidopsis thaliana.
    New Phytol., doi: 10.1111/nph.18801. [PubMed]
19. Luth, V.M., Rempfer, C., van Gessel, N., Herzog, O., Hanser, M., Braun, M., Decker, E.L., and Reski, R. (2023)
    A Physcomitrella PIN protein acts in spermatogenesis and sporophyte retention.
    New Phytol., doi: 10.1111/nph.18691. [PubMed]
20. Lueth, V.M. and Reski, R. (2023)
    Mosses.
    Curr Biol. 33: R1175-R1181. [PubMed]
21. Maric, A. (2023)
    Beyond the genetics of flowering: Integration of ethylene signaling and histone methylation controls flowering time.
    Plant Physiol., doi: 10.1093/plphys/kiad230. [PubMed]
22. Maric, A. (2023)
    Hit the acceleration petal: Methylation as a mediator of ethylene-induced petal senescence.
    Plant Physiol. 192: 17–18. [PubMed]
23. Maric, A. and Hartman, S. (2023)
    The leaf sheath promotes prolonged flooding protection by giving rise to specialized adventitious roots.
    New Phytol., doi: 10.1111/nph.18824. [PubMed]
24. Maric, A. (2023)
    A balancing act: ERFVII feedback loops finetune the flooding stress response.
    Plant Physiol., doi: 10.1093/plphys/kiad609. [PubMed]
25. Marttinen, E.M., Decker, E., Heinonen, P., Reski, R., and Valkonen, J.P.T. (2023)
    Putative NAD(P)-binding Rossmann fold protein is involved in chitosan-induced peroxidase activity and lipoxygenase expression in Physcomitrella.
    Mol. Plant Microbe Interact., doi: 10.1094/MPMI-07-23-0094-R. [PubMed]
26. Merai, Z., Xu, F., Musilek, A., Ackerl, F., Khalil, S., Soto-Jimenez, L.M., Lalatovic, K., Klose, C., Tarkowska, D., Tureckova, V., Strnad, M., and Scheid, O.M. (2023)
    Phytochromes mediate germination inhibition under red, far-red, and white light in Aethionema arabicum.
    Plant Physiol., doi: 10.1093/plphys/kiad138. [PubMed]
27. Mohsenin, H., Wagner, H.J., Rosenblatt, M., Kemmer, S., Drepper, F., Huesgen, P., Timmer, J., and Weber, W. (2023)
    Design of a biohybrid materials circuit with binary decoder functionality.
    Adv. Mater.: e2308092., doi: 10.1002/adma.202308092. [PubMed]
28. Neuwirt, E., Magnani, G., Cikovic, T., Wohrle, S., Fischer, L., Kostina, A., Flemming, S., Fischenich, N.J., Saller, B.S., Gorka, O., Renner, S., Agarinis, C., Parker, C.N., Boettcher, A., Farady, C.J., Kesselring, R., Berlin, C., Backofen, R., Rodriguez-Franco, M., Kreutz, C., Prinz, M., Tholen, M., Reinheckel, T., Ott, T., Gross, C.J., Jost, P.J., and Gross, O. (2023)
    Tyrosine kinase inhibitors can activate the NLRP3 inflammasome in myeloid cells through lysosomal damage and cell lysis.
    Sci. Signal. 16: eabh1083. [PubMed]
29. Nziengui, H. and Ditengou, F.A. (2023)
    Editorial: In tune with their environment: how plant roots cope with environmental signals.
    Front Plant Sci. 14: 1234996. [PubMed]
30. Parmagnani, A.S., Mannino, G., Brillada, C., Novero, M., Dall'Osto, L., and Maffei, M.E. (2023)
    Biology of two-spotted spider mite (Tetranychus urticae): Ultrastructure, photosynthesis, guanine transcriptomics, carotenoids and chlorophylls metabolism, and decoyinine as a potential acaricide.
    Int. J. Mol. Sci. 24 [PubMed]
31. Pasternak, T., Kircher, S., Palme, K., and Perez-Perez, J.M. (2023)
    Regulation of early seedling establishment and root development in Arabidopsis thaliana by light and carbohydrates.
    Planta 258: 76. [PubMed]
32. Pasternak, T., Palme, K., and Perez-Perez, J.M. (2023)
    Role of reactive oxygen species in the modulation of auxin flux and root development in Arabidopsis thaliana.
    Plant J., doi: 10.1111/tpj.16118. [PubMed]
33. Priyadarshini, N., Steube, N., Wiens, D., Narikawa, R., Wilde, A., Hochberg, G.K.A., and Enomoto, G. (2023)
    Evidence for an early green/red photocycle that precedes the diversification of GAF domain photoreceptor cyanobacteriochromes.
    Photochem. Photobiol. Sci., doi: 10.1007/s43630-023-00387-4. [PubMed]
34. Ruiz-Molina, N., Parsons, J., Deckerk E.L, and Reski, R. (2023)
    Structural modelling of human complement FHR1 and two of its synthetic derivatives provides insight into their in-vivo functions.
    Comput. Struct. Biotechnol. J. 21: 1473–1486. [PubMed]
35. Saeed, B., Deligne, F., Brillada, C., Dunser, K., Ditengou, F.A., Turek, I., Allahham, A., Grujic, N., Dagdas, Y., Ott, T., Kleine-Vehn, J., Vert, G., and Trujillo, M. (2023)
    K63-linked ubiquitin chains are a global signal for endocytosis and contribute to selective autophagy in plants.
    Curr Biol., doi: 10.1016/j.cub.2023.02.024. [PubMed]
36. Saltukoglu, D., Ozdemir, B., Holtmannspotter, M., Reski, R., Piehler, J., Kurre, R., and Reth, M. (2023)
    Plasma membrane topography governs the 3D dynamic localization of IgM B cell antigen receptor clusters.
    EMBO J.: e112030., doi: 10.15252/embj.2022112030. [PubMed]
37. Sarmah, P., Shang, W., Origi, A., Licheva, M., Kraft, C., Ulbrich, M., Lichtenberg, E., Wilde, A., and Koch, H.G. (2023)
    mRNA targeting eliminates the need for the signal recognition particle during membrane protein insertion in bacteria.
    Cell Rep. 42: 112140. [PubMed]
38. Sorkin, M.L., Tzeng, S.C., King, S., Romanowski, A., Kahle, N., Bindbeutel, R., Hiltbrunner, A., Yanovsky, M.J., Evans, B.S., and Nusinow, D.A. (2023)
    COLD REGULATED GENE 27 and 28 antagonize the transcriptional activity of the RVE8/LNK1/LNK2 circadian complex.
    Plant Physiol., doi: 10.1093/plphys/kiad210. [PubMed]
39. Staudt, A.M., Kretsch, T., and Hiltbrunner, A. (2023)
    EID1 promotes the response to canopy shade in Arabidopsis thaliana by repressing the action of phytochrome A.
    MicroPubl. Biol., 10.17912/micropub.biology.001015. [PubMed]
40. Su, C., Rodriguez-Franco, M., Lace, B., Nebel, N., Hernandez-Reyes, C., Liang, P., Schulze, E., Mymrikov, E.V., Gross, N.M., Knerr, J., Wang, H., Siukstaite, L., Keller, J., Libourel, C., Fischer, A.A.M., Gabor, K.E., Mark, E., Popp, C., Hunte, C., Weber, W., Wendler, P., Stanislas, T., Delaux, P.M., Einsle, O., Grosse, R., Romer, W., and Ott, T. (2023)
    Stabilization of membrane topologies by proteinaceous remorin scaffolds.
    Nat. Commun. 14: 323. [PubMed]
41. Su, C., Wang, L., and Kong, F. (2023)
    miR172: a messenger between nodulation and flowering.
    Trends Plant Sci., doi: 10.1016/j.tplants.2023.03.010. [PubMed]
42. Su, C., Zhang, G., Rodriguez-Franco, M., Hinnenberg, R., Wietschorke, J., Liang, P., Yang, W., Uhler, L., Li, X., and Ott, T. (2023)
    Transcellular progression of infection threads in Medicago truncatula roots is associated with locally confined cell wall modifications.
    Curr. Biol. 33: 533-542. [PubMed]
43. Tessi, T.M., Maurino, V.G., Shahriari, M., Meissner, E., Novak, O., Pasternak, T., Schumacher, B.S., Ditengou, F., Li, Z., Duerr, J., Flubacher, N.S., Nautscher, M., Williams, A., Kazimierczak, Z., Strnad, M., Thumfart, J.O., Palme, K., Desimone, M., and Teale, W.D. (2023)
    AZG1 is a cytokinin transporter that interacts with auxin transporter PIN1 and regulates the root stress response.
    New Phytol., doi: 10.1111/nph.18879. [PubMed]
44. Ugalde, J.M. and Maric, A. (2023)
    In my own time: A non-cell-autonomous circadian regulation in plant cells.
    Plant Physiol., doi: 10.1093/plphys/kiad303. [PubMed]
45. Ung, K.L., Schulz, L., Kleine-Vehn, J., Pedersen, B.P., and Hammes, U.Z. (2023)
    Auxin transport at the ER: Roles and structural similarity of PIN-FORMED and PIN-LIKES.
    J. Exp. Bot., doi: 10.1093/jxb/erad192. [PubMed]
46. Vollmeister, E., Phokas, A., Meyberg, R., Bohm, C.V., Peter, M., Kohnert, E., Yuan, J., Grosche, C., Gottig, M., Ullrich, K.K., Perroud, P.F., Hiltbrunner, A., Kreutz, C., Coates, J.C., and Rensing, S.A. (2023)
    A DELAY OF GERMINATION 1 (DOG1)-like protein regulates spore germination in the moss Physcomitrium patens.
    Plant J., doi: 10.1111/tpj.16537. [PubMed]
47. Waidmann, S., Beziat, C., Ferreira Da Silva Santos, J., Feraru, E., Feraru, M.I., Sun, L., Noura, S., Boutte, Y., and Kleine-Vehn, J. (2023)
    Endoplasmic reticulum stress controls PIN-LIKES abundance and thereby growth adaptation.
    Proc. Natl. Acad. Sci. U. S. A. 120: e2218865120. [PubMed]
48. Wanney, W.C., Youssar, L., Kostova, G., and Georg, J. (2023)
    Improved RNA stability estimation indicates that transcriptional interference is frequent in diverse bacteria.
    Commun. Biol. 6: 732. [PubMed]
49. Watanabe, M., Ikeuchi, M., and Wilde, A. (2023)
    The organization of the phycobilisome-photosystem I supercomplex depends on the ratio between two different phycobilisome linker proteins.
    Photochem. Photobiol. Sci., doi: 10.1007/s43630-023-00397-2. [PubMed]
50. Yao, W.J., Wang, Y.P., Peng, J., Yin, P.P., Gao, H., Xu, L., Laux, T., Zhang, X.S., and Su, Y.H. (2023)
    The RPT2a-MET1 axis regulates TERMINAL FLOWER1 to control inflorescence meristem indeterminacy in Arabidopsis.
    Plant Cell, doi: 10.1093/plcell/koad249. [PubMed]
51. Yuan, J., Xu, T., and Hiltbrunner, A. (2023)
    Phytochrome higher order mutants reveal a complex set of light responses in the moss Physcomitrium patens.
    New Phytol., doi: 10.1111/nph.18977. [PubMed]
52. Yuan, J., Ott, T., and Hiltbrunner, A. (2023)
    Phytochromes and flowering: legumes do it another way.
    Trends Plant Sci., doi: 10.1016/j.tplants.2023.02.004. [PubMed]
53. Zhang, N., Gui, S., and Wang, Y. (2023)
    LAZing around: the intricate dance of amyloplast sedimentation and gravity sensing in plants.
    Mol Plant., doi: 10.1016/j.molp.2023.11.001. [PubMed]

Publications 2022

(in alphabetical order; latest publications in red)

1. Bohlender, L.L., Parsons, J., Hoernstein, S.N.W., Bangert, N., Rodríguez-Jahnke, F., Reski, R., and Decker, E.L. (2022)
   Unexpected arabinosylation after humanization of plant protein N-glycosylation.
   Front. Bioeng. Biotechnol. 10: 838365. [PubMed]
2. Brillada, C. and Trujillo, M. (2022)
   E2 ubiquitin-conjugating enzymes (UBCs): drivers of ubiquitin signalling in plants.
   Essays Biochem., doi: 10.1042/EBC20210093. [PubMed]
3. Chen, J., Wang, Z., Wang, L., Hu, Y., Yan, Q., Lu, J., Ren, Z., Hong, Y., Ji, H., Wang, H., Wu, X., Lin, Y., Su, C., Ott, T., and Li, X. (2022)
   The B-type response regulator GmRR11d mediates systemic inhibition of symbiotic nodulation.
   Nat Commun. 13: 7661. [PubMed]
4. Courbier, S. (2022)
   Dimming the lights (and defenses): Dim light decreases rice resistance against brown plant hopper insects.
   Plant Physiol., doi: 10.1093/plphys/kiac529. [PubMed]
5. Courbier, S. (2022)
   Blown out of the water: mutation in calcium transporter cax1 provides anoxia tolerance in Arabidopsis.
   Plant Physiol., doi: 10.1093/plphys/kiac443. [PubMed]
6. Courbier, S. (2022)
   Breaking Dawn: The twilight of starch degradation in the light.
   Plant Physiol., doi: 10.1093/plphys/kiac202. [PubMed]
7. Courbier, S. and Hartman, S. (2022)
   WRKYs work to limit root growth in response to shade.
   Plant Physiol. 188: 937–938. [PubMed]
8. Dawson, J., Pandey, S., Yu, Q., Schaub, P., Wust, F., Moradi, A.B., Dovzhenko, O., Palme, K., and Welsch, R. (2022)
   Determination of protoplast growth properties using quantitative single-cell tracking analysis.
   Plant Methods 18: 64. [PubMed]
9. Ding, J., Schuergers, N., Baehre, H., and Wilde, A. (2022)
   Enzymatic properties of CARF-domain proteins in Synechocystis sp. PCC 6803.
   Front. Microbiol. 13: 1046388. [PubMed]
10. Dunser, K., Scholler, M., Rossling, A.K., Lofke, C., Xiao, N., Parizkova, B., Melnik, S., Rodriguez-Franco, M., Stoger, E., Novak, O., and Kleine-Vehn, J. (2022)
    Endocytic trafficking promotes vacuolar enlargements for fast cell expansion rates in plants.
    Elife 11: e75945. [PubMed]
11. Feraru, E., Feraru, M.I., Moulinier-Anzola, J., Schwihla, M., Ferreira Da Silva Santos, J., Sun, L., Waidmann, S., Korbei, B., and Kleine-Vehn, J. (2022)
    PILS proteins provide a homeostatic feedback on auxin signaling output.
    Development 149: dev200929. [PubMed]
12. Huang, G., Kilic, A., Karady, M., Zhang, J., Mehra, P., Song, X., Sturrock, C.J., Zhu, W., Qin, H., Hartman, S., Schneider, H.M., Bhosale, R., Dodd, I.C., Sharp, R.E., Huang, R., Mooney, S.J., Liang, W., Bennett, M.J., Zhang, D., and Pandey, B.K. (2022)
    Ethylene inhibits rice root elongation in compacted soil via ABA- and auxin-mediated mechanisms.
    Proc. Natl. Acad. Sci. U. S. A. 119: e2201072119. [PubMed]
13. Jaramillo, A.M., Sierra, S., Chavarriaga-Aguirre, P., Castillo, D.K., Gkanogiannis, A., Lopez-Lavalle, L.A.B., Arciniegas, J.P., Sun, T., Li, L., Welsch, R., Boy, E., and Alvarez, D. (2022)
    Characterization of cassava ORANGE proteins and their capability to increase provitamin A carotenoids accumulation.
    PLoS One 17: e0262412. [PubMed]
14. Kamal, N., Tsardakas Renhuldt, N., Bentzer, J., Gundlach, H., Haberer, G., Juhasz, A., Lux, T., Bose, U., Tye-Din, J.A., Lang, D., van Gessel, N., Reski, R., Fu, Y.B., Spegel, P., Ceplitis, A., Himmelbach, A., Waters, A.J., Bekele, W.A., Colgrave, M.L., Hansson, M., Stein, N., Mayer, K.F.X., Jellen, E.N., Maughan, P.J., Tinker, N.A., Mascher, M., Olsson, O., Spannagl, M., and Sirijovski, N. (2022)
    The mosaic oat genome gives insights into a uniquely healthy cereal crop.
    Nature, doi: 10.1038/s41586-022-04732-y. [PubMed]
15. Koschmieder, J., Alseekh, S., Shabani, M., Baltenweck, R., Maurino, V.G., Palme, K., Fernie, A.R., Hugueney, P., and Welsch, R. (2022)
    Color recycling: metabolization of apocarotenoid degradation products suggests carbon regeneration via primary metabolic pathways.
    Plant Cell Rep., doi: 10.1007/s00299-022-02831-8. [PubMed]
16. Kowarschik, K. and Trujillo, M. (2022)
    Coexpression and reconstitution of enzymatic cascades in bacteria using ubigate.
    Methods Mol. Biol. 2379: 155–169. [PubMed]
17. Kozgunova, E., Yoshida, M.W., Reski, R, and Goshima, G. (2022)
    Spindle motility skews division site determination during asymmetric cell division in Physcomitrella.
    Nat. Commun. 13: 2488. [PubMed]
18. Li, Z., Sheerin, D.J., von Roepenack-Lahaye, E., Stahl, M., and Hiltbrunner, A. (2022).
    The phytochrome interacting proteins ERF55 and ERF58 repress light-induced seed germination in Arabidopsis thaliana.
    Nat. Commun. 13, 1656. [PubMed]
19. Liu, Y., Mu, C., Du, D., Yang, Y., Li, L., Xuan, W., Kircher, S., Palme, K., Li, X., and Li, R. (2022)
    Alkaline stress reduces root waving by regulating PIN7 vacuolar transport.
    Front. Plant Sci. 13: 1049144. [PubMed]
20. Liu, Z., Hartman, S., van Veen, H., Zhang, H., Leeggangers, H.A.C.F., Martopawiro, S., Bosman, F., de Deugd, F., Su, P., Hummel, M., Rankenberg, T., Hassall, K.L., Bailey-Serres, J., Theodoulou, F.L., Voesenek, L.A.C.J., and Sasidharan, R. (2022)
    Ethylene augments root hypoxia tolerance via growth cessation and reactive oxygen species amelioration.
    Plant Physiol., doi: 10.1093/plphys/kiac245. [PubMed]
21. Lüth, V.M., Kaltenbrunner, A., Pascal, A., Decker, L.E., and Reski, R. (2022)
    Protonema induction, transient transformation, and protoplast regeneration in the peat moss Sphagnum papillosum.
    Plant Cell Tiss. Organ. Cult., doi: 10.1007/s11240-022-02384-4
22. Maric, A. and Hartman, S. (2022)
    Ethylene controls translational gatekeeping to overcome flooding stress in plants.
    EMBO J.: e112282., doi: 10.15252/embj.2022112282. [PubMed]
23. Julius, L.A.N., Matter, L., Schuergers, N., Lutzenkirchen, J., Trouillet, V., Gil-Diaz, T., Mamleyev, E.R., Wilde, A., Badilita, V., and Korvink, J.G. (2023)
    Surface characterisation reveals substrate suitability for cyanobacterial phototaxis.
    Acta Biomater. 155: 386–399. [PubMed]
24. Nakane, D., Enomoto, G., Bahre, H., Hirose, Y., Wilde, A., and Nishizaka, T. (2022)
    Thermosynechococcus switches the direction of phototaxis by a c-di-GMP-dependent process with high spatial resolution.
    Elife 11: e73405. [PubMed]
25. Otero, S., Gildea, I., Roszak, P., Lu, Y., Di Vittori, V., Bourdon, M., Kalmbach, L., Blob, B., Heo, J.O., Peruzzo, F., Laux, T., Fernie, A.R., Tavares, H., and Helariutta, Y. (2022)
    A root phloem pole cell atlas reveals common transcriptional states in protophloem-adjacent cells.
    Nat. Plants 8: 954–970. [PubMed]
26. Pandey, S., Moradi, A.B., Dovzhenko, O., Touraev, A., Palme, K., and Welsch, R. (2022)
    Molecular control of sporophyte-gametophyte ontogeny and transition in plants.
    Front. Plant Sci. 12: 789789. [PubMed]
27. Pasternak, T., Kircher, S., Perez-Perez, J.M., and Palme, K. (2022)
    A simple pipeline for cell cycle kinetic studies in the root apical meristem.
    J. Exp. Bot., doi: 10.1093/jxb/erac123. [PubMed]
28. Reski, R. (2022)
    Ralf Reski
    Curr. Biol. 32: R811-R813. [PubMed]
29. Ramezaniaghdam, M., Nahdi, N.D., and Reski, R. (2022)
    Recombinant spider silk: Promises and bottlenecks.
    Front. Bioeng. Biotechnol. 10: 835637. [PubMed]
30. Richter, F., Chen, M., Schaub, P., Wust, F., Zhang, D., Schneider, S., Gross, G.A., Mader, P., Dovzhenko, O., Palme, K., Kohler, J.M., and Cao, J. (2022)
    Induction of embryogenic development in haploid microspore stem cells in droplet-based microfluidics.
    Lab Chip, doi: 10.1039/d2lc00788f. [PubMed]
31. Ruiz-Molina, N., Parsons, J., Muller, M., Hoernstein, S.N.W., Bohlender, L.L., Pumple, S., Zipfel, P.F., Haffner, K., Reski, R., and Decker, E.L. (2022)
    A synthetic protein as efficient multitarget regulator against complement over-activation.
    Commun. Biol. 5: 152. [PubMed]
32. Ruiz-Molina, N., Parsons, J., Schroeder, S., Posten, C., Reski, R., and Decker, E.L. (2022)
    Process engineering of biopharmaceutical production in moss bioreactors via model-based description and evaluation of phytohormone impact.
    Front. Bioeng. Biotechnol. 10: 837965. [PubMed]
33. Saeed, B. and Trujillo, M. (2022)
    Analysis of immunity-related oxidative bursts by a luminol-based assay.
    Methods Mol. Biol. 2494: 339–346. [PubMed]
34. Schwenk, P. and Hiltbrunner, A. (2022)
    Phytochrome A mediates the disassembly of processing bodies in far-red light
    Front. Plant Sci. 13: 828529. [PubMed]
35. Shrestha, A., Hernandez-Reyes, C., Grimm, M., Krumwiede, J., Stein, E., Schenk, S.T., and Schikora, A. (2022)
    AHL-Priming Protein 1 mediates N-3-oxo-tetradecanoyl-homoserine lactone priming in Arabidopsis.
    BMC Biol. 20: 268. [PubMed]
36. Stafen, C.F., Kleine-Vehn, J., and Maraschin, F.D.S. (2022)
    Signaling events for photomorphogenic root development.
    Trends Plant Sci., doi: 10.1016/j.tplants.2022.08.002. [PubMed]
37. Stenitzer, D., Mócsai, R., Zechmeister, H., Reski, R., Decker, E.L., Altmann, F. (2022)
    O-methylated N-glycans distinguish mosses from vascular plants.
    Biomolecules 12:136. [PubMed]
38. Su, C. (2022)
    Pectin modifications at the symbiotic interface.
    New Phytol., doi: 10.1111/nph.18705. [PubMed]
39. Theodoulou, F.L., Orosa-Puente, B., Trujillo, M., and Rubio, V. (2022)
    Plant proteostasis: a proven and promising target for crop improvement.
    Essays Biochem. 66: 75–85. [PubMed]
40. Trenner, J., Monaghan, J., Saeed, B., Quint, M., Shabek, N., and Trujillo, M. (2022)
    Evolution and functions of plant U-box proteins: from protein quality control to signaling.
    Annu. Rev. Plant Biol., doi: 10.1146/annurev-arplant-102720-012310. [PubMed]
41. Waidmann, S. and Kleine-Vehn, J. (2022)
    Staging of emerged lateral roots in Arabidopsis thaliana.
    Methods Mol. Biol. 2368: 111–115. [PubMed]
42. Welsch, R. and Li, L. (2022)
    Golden Rice-Lessons learned for inspiring future metabolic engineering strategies and synthetic biology solutions.
    Methods Enzymol. 671: 1–29. [PubMed]
43. Yang, L., Zhu, M., Yang, Y., Wang, K., Che, Y., Yang, S., Wang, J., Yu, X., Li, L., Wu, S., Palme, K., and Li, X. (2022)
    CDC48B facilitates the intercellular trafficking of SHORT-ROOT during radial patterning in roots.
    J. Integr. Plant Biol., doi: 10.1111/jipb.13231. [PubMed]
44. Yang, Y., Liu, F., Liu, L., Zhu, M., Yuan, J., Mai, Y.X., Zou, J.J., Le, J., Wang, Y., Palme, K., Li, X., Wang, Y., and Wang, L. (2022)
    The unconventional prefoldin RPB5 interactor mediates the gravitropic response by modulating cytoskeleton organization and auxin transport in Arabidopsis.
    J. Integr. Plant Biol., doi: 10.1111/jipb.13341. [PubMed]
45. Yu, G., Derkacheva, M., Rufian, J.S., Brillada, C., Kowarschik, K., Jiang, S., Derbyshire, P., Ma, M., DeFalco, T.A., Morcillo, R.J.L., Stransfeld, L., Wei, Y., Zhou, J.M., Menke, F.L.H., Trujillo, M., Zipfel, C., and Macho, A.P. (2022)
    The Arabidopsis E3 ubiquitin ligase PUB4 regulates BIK1 and is targeted by a bacterial type-III effector.
    EMBO J. 41: e107257. [PubMed]
46. Zhou, X., Rao, S., Wrightstone, E., Sun, T., Lui, A.C.W., Welsch, R., and Li, L. (2022)
    Phytoene synthase: the key rate-limiting enzyme of carotenoid biosynthesis in plants.
    Front. Plant Sci. 13: 884720. [PubMed]

Publications 2021

(in alphabetical order; latest publications in red)

1. Asgharzadeh, P., Birkhold, A.I., Özdemir, B., Reski, R. and Röhrle, O. (2021)
   Biopolymer segmentation from CLSM microscopy images using a convolutional neural network.
   Proc. Appl. Math. Mech. 20: e202000188. doi: 10.1002/pamm.202000188
2. Bredow, M., Bender, K.W., Johnson Dingee, A., Holmes, D.R., Thomson, A., Ciren, D., Tanney, C.A.S., Dunning, K.E., Trujillo, M., Huber, S.C., and Monaghan, J. (2021)
   Phosphorylation-dependent subfunctionalization of the calcium-dependent protein kinase CPK28.
   Proc. Natl. Acad. Sci. U. S. A. 118: e2024272118. [PubMed]
3. Brillada, C., Teh, O.K., Ditengou, F.A., Lee, C.W., Klecker, T., Saeed, B., Furlan, G., Zietz, M., Hause, G., Eschen-Lippold, L., Hoehenwarter, W., Lee, J., Ott, T., and Trujillo, M. (2021)
   Exocyst subunit Exo70B2 is linked to immune signaling and autophagy.
   Plant Cell 33: 404–419. [PubMed]
4. Chen, Z., Shang, J.L., Hou, S., Li, T., Li, Q., Yang, Y.W., Hess, W.R., and Qiu, B.S. (2021)
   Genomic and transcriptomic insights into the habitat adaptation of the diazotrophic paddy-field cyanobacterium Nostoc sphaeroides.
   Environ. Microbiol., doi: 10.1111/1462-2920.15521. [PubMed]
5. de Folter, S., Palme, K., and Perez-Perez, J.M. (2021)
   Editorial: Plant development: from cells to systems biology.
   Front. Plant Sci. 12: 810071. [PubMed]
6. Engel, H., Guischard, F., Krause, F., Nandy, J., Kaas, P., Hofflin, N., Kohn, M., Kilb, N., Voigt, K., Wolf, S., Aslan, T., Baezner, F., Hahne, S., Ruckes, C., Weygant, J., Zinina, A., Akmeric, E.B., Antwi, E.B., Dombrovskij, D., Franke, P., Lesch, K.L., Vesper, N., Weis, D., Gensch, N., Di Ventura, B., and Ozturk, M.A. (2021)
   finDr: A web server for in silico D-peptide ligand identification.
   Synth. Syst. Biotechnol. 6:402-413. [PubMed]
7. Fonseca de Lima, C.F., Kleine-Vehn, J., de Smet, I., and Feraru, E. (2021)
   Getting to the root of belowground high temperature responses in plants.
   J. Exp. Bot., doi: 10.1093/jxb/erab202. [PubMed]
8. Giovannoni, M., Marti, L., Ferrari, S., Tanaka-Takada, N., Maeshima, M., Ott, T., De Lorenzo, G., and Mattei, B. (2021)
   The plasma membrane-associated Ca²⁺-binding protein PCaP1 is required for oligogalacturonide and flagellin-induced priming and immunity.
   Plant Cell Environ., doi: 10.1111/pce.14118. [PubMed]
9. Han, Y., Jakob, A., Engel, S., Wilde, A., and Schuergers, N. (2021)
   PATAN-domain regulators interact with the Type IV pilus motor to control phototactic orientation in the cyanobacterium Synechocystis.
   Mol. Microbiol., doi: 10.1111/mmi.14872. [PubMed]
10. Heck, M., Melková, I., Posten, C., Decker, E.L., and Reski, R. (2021)
    Medium optimization for biomass production of three peat moss (Sphagnum L.) species using fractional factorial design and response surface methodology.
    Bioresour. Technol. Rep. doi: 10.1016/j.biteb.2021.100729
11. Hernandez-Reyes, C., Lichtenberg, E., Keller, J., Delaux, P.M., Ott, T., and Schenk, S.T. (2021)
    NIN-like proteins; interesting players in rhizobia-induced nitrate signaling response during interaction with non-legume host Arabidopsis thaliana.
    Mol. Plant Microbe Interact., doi: 10.1094/MPMI-10-21-0261-R. [PubMed]
12. Hoffmann, U.A., Heyl, F., Rogh, S.N., Wallner, T., Backofen, R., Hess, W.R., Steglich, C., and Wilde, A. (2021)
    Transcriptome-wide in vivo mapping of cleavage sites for the compact cyanobacterial ribonuclease E reveals insights into its function and substrate recognition.
    Nucleic Acids Res. 49: 13075–13091. [PubMed]
13. Horn, A., Arnaud, P., Lončarević, I., Vopatto Marques, R., Lu, Y., Miguel, S., Bourgaud, F., Thorsteinsdóttir, M., Cronberg, N., Becker, J.D., Reski, R., and Simonsen, H.T. (2021)
    Natural products from bryophytes: from basic biology to biotechnological appliations.
    Crit. Rev. Plant Sci. doi: 10.1080/07352689.2021.1911034
14. Kang, B.H., Anderson, C.T., Arimura, S.I., Bayer, E., Bezanilla, M., Botella, M.A., Brandizzi, F., Burch-Smith, T.M., Chapman, K.D., Dunser, K., Gu, Y., Jaillais, Y., Kirchhoff, H., Otegui, M.S., Rosado, A., Tang, Y., Kleine-Vehn, J., Wang, P., and Zolman, B.K. (2021)
    A glossary of plant cell structures: Current insights and future questions.
    Plant Cell, doi: 10.1093/plcell/koab247. [PubMed]
15. Krauspe, V., Fahrner, M., Spat, P., Steglich, C., Frankenberg-Dinkel, N., Macek, B., Schilling, O., and Hess, W.R. (2021)
    Discovery of a small protein factor involved in the coordinated degradation of phycobilisomes in cyanobacteria.
    Proc. Natl. Acad. Sci. U. S. A. 118: e2012277118. [PubMed]
16. Kriegshauser, L., Knosp, S., Grienenberger, E., Tatsumi, K., Gütle, D.D., Sørensen, I., Herrgott, L., Zumsteg, J., Rose, J.K.C, Reski, R., Werck-Reichhart, D., Renault, H. (2021)
    Function of the HYDROXYCINNAMOYL-CoA:SHIKIMATE HYDROXYCINNAMOYL TRANSFERASE is evolutionarily conserved in embryophytes.
    Plant Cell, doi: 10.1093/plcell/koab044. [PubMed]
17. Koschmieder, J., Wust, F., Schaub, P., Alvarez, D., Trautmann, D., Krischke, M., Rustenholz, C., Mano, J., Mueller, M.J., Bartels, D., Hugueney, P., Beyer, P., and Welsch, R. (2021)
    PlanT apocarotenoid metabolism utilizes defense mechanisms against reactive carbonyl species and xenobiotics.
    Plant Physiol. 185: 331–351. [PubMed]
18. Liang, P., Schmitz, C., Lace, B., Ditengou, F.A., Su, C., Schulze, E., Knerr, J., Grosse, R., Keller, J., Libourel, C., Delaux, P.M., and Ott, T. (2021)
    Formin-mediated bridging of cell wall, plasma membrane, and cytoskeleton in symbiotic infections of Medicago truncatula.
    Curr. Biol., doi: 10.1016/j.cub.2021.04.002. [PubMed]
19. Li, J. and Hiltbrunner, A. (2021)
    Is the Pr form of phytochrome biologically active in the nucleus?
    Mol. Plant 14: 535-537. [PubMed]
20. Marttinen, E.M., Lehtonen, M.T., van Gessel, N., Reski, R., and Valkonen, J.P.T. (2021)
    Viral suppressor of RNA silencing in vascular plants also interferes with the development of the bryophyte Physcomitrella patens.
    Plant Cell Environ., doi: 10.1111/pce.14194. [PubMed]
21. Miotto, Y.E., da Costa, C.T., Offringa, R., Kleine-Vehn, J., and Maraschin, F.D.S. (2021)
    Effects of light intensity on root development in a D-root growth system.
    Front. Plant Sci. 12: 778382. [PubMed]
22. Montiel, J., Reid, D., Gronbaek, T.H., Benfeldt, C.M., James, E.K., Ott, T., Ditengou, F.A., Nadzieja, M., Kelly, S., and Stougaard, J. (2021)
    Distinct signaling routes mediate intercellular and intracellular rhizobial infection in Lotus japonicus.
    Plant Physiol. 185: 1131–1147. [PubMed]
23. Mullineaux, C.W. and Wilde, A. (2021)
    The social life of cyanobacteria.
    Elife. 10:e70327. [PubMed]
24. Murcia, G., Enderle, B., Hiltbrunner, A., and Casal, J.J. (2021)
    Phytochrome B and PCH1 protein dynamics store night temperature information.
    Plant J. 105: 22–33. [PubMed]
25. Navarrete, F., Grujic, N., Stirnberg, A., Saado, I., Aleksza, D., Gallei, M., Adi, H., Alcantara, A., Khan, M., Bindics, J., Trujillo, M., and Djamei, A. (2021)
    The Pleiades are a cluster of fungal effectors that inhibit host defenses.
    PLoS Pathog. 17: e1009641. [PubMed]
26. Oeser, S., Wallner, T., Schürger, N., Bucinska, L., Sivabalasarma, S., Bahre, H., Albers, S.V., and Wilde, A. (2021)
    Minor pilins are involved in motility and natural competence of the cyanobacterium Synechocystis sp. PCC 6803.
    Mol. Microbiol., doi: 10.1111/mmi.14768. [PubMed]
27. Ostendorf, A.K, van Gessel, N., Malkowsky, Y., Sabovljevic, M.S., Rensing, S.A., Roth-Nebelsick, A., and Reski, R. (2021)
    Polyploidization within the Funariaceae — a key principle behind speciation, sporophyte reduction and the high variance of spore diameters?
    Bry. Div. Evo. 43: 164–179. doi: 10.11646/bde.43.1.13
28. Özdemir, B. and Reski, R. (2021)
    Automated and semi-automated enhancement, segmentation and tracing of cytoskeletal networks in microscopic images: A review.
    Comput. Struct. Biotechnol. J. 19: 2106–2120. [PubMed]
29. Pasternak, T., Paponov, I.A., and Kondratenko, S. (2021)
    Optimizing protocols for Arabidopsis shoot and root protoplast cultivation.
    Plants (Basel). 10: 375. [PubMed]
30. Rempfer, C., Wiedemann, G., Schween, G., Kerres, K.L., Lucht, J.M., Horres, R., Decker, E.L., and Reski, R. (2021)
    Autopolyploidization affects transcript patterns and gene targeting frequencies in Physcomitrella.
    Plant Cell Rep., doi: 10.1007/s00299-021-02794-2. [PubMed]
31. Resemann, H.C., Herrfurth, C., Feussner, K., Hornung, E., Ostendorf, A.K., Gomann, J., Mittag, J., van Gessel, N., Vries, J., Ludwig-Muller, J., Markham, J., Reski, R., and Feussner, I. (2021)
    Convergence of sphingolipid desaturation across over 500 million years of plant evolution.
    Nat. Plants 7: 219-232. [PubMed]
32. Rich, M.K., Vigneron, N., Libourel, C., Keller, J., Xue, L., Hajheidari, M., Radhakrishnan, G.V., Le Ru, A., Diop, S.I., Potente, G., Conti, E., Duijsings, D., Batut, A., Le Faouder, P., Kodama, K., Kyozuka, J., Sallet, E., Becard, G., Rodriguez-Franco, M., Ott, T., Bertrand-Michel, J., Oldroyd, G.E.D., Szovenyi, P., Bucher, M., and Delaux, P.M. (2021)
    Lipid exchanges drove the evolution of mutualism during plant terrestrialization.
    Science. 372: 864–868. [PubMed]
33. Riediger, M., Spat, P., Bilger, R., Voigt, K., Macek, B., and Hess, W.R. (2021)
    AnalYsis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (grad-seq).
    Plant Cell 33: 248–269. [PubMed]
34. Russo, D.A., Zedler, J.A.Z., Conradi, F.D., Schuergers, N., Jensen, P.E., Mullineaux, C.W., Wilde, A., and Pohnert, G. (2021)
    Development of a highly sensitive luciferase-based reporter system to study two-step protein secretion in cyanobacteria.
    J. Bacteriol.: JB0050421., doi: 10.1128/JB.00504-21. [PubMed]
35. Scheurer, N.M., Rajarathinam, Y., Timm, S., Kobler, C., Kopka, J., Hagemann, M., and Wilde, A. (2021)
    HomoLogs of circadian clock proteins impact the metabolic switch between light and dark growth in the Cyanobacterium Synechocystis sp. PCC 6803.
    Font. Plant Sci. 12: 675227. [PubMed]
36. Schwenk, P., Sheerin, D.J., Ponnu, J., Staudt, A.M., Lesch, K.L., Lichtenberg, E., Medzihradszky, K.F., Hoecker, U., Klement, E., Viczian, A., and Hiltbrunner, A. (2021)
    Uncovering a novel function of the CCR4-NOT complex in phytochrome A-mediated light signalling in plants.
    Elife 10, e63697. [PubMed]
37. Tang, S., Shahriari, M., Xiang, J., Pasternak, T., Igolkina, A., Aminizade, S., Zhi, H., Gao, Y., Roodbarkelari, F., Sui, Y., Jia, G., Wu, C., Zhang, L., Zhao, L., Li, X., Meshcheryakov, G., Samsonova, M., Diao, X., Palme, K., and Teale, W. (2021)
    The role of AUX1 during lateral root development in the domestication of the model C4 grass Setaria italica.
    J. Exp. Bot., doi: 10.1093/jxb/erab556. [PubMed]
38. Top, O., Milferstaedt, S.W.L., van Gessel, N., Hoernstein, S.N.W., Ozdemir, B., Decker, E.L., and Reski, R. (2021)
    Expression of a human cDNA in moss results in spliced mRNAs and fragmentary protein isoforms.
    Commun Biol. 4: 964. [PubMed]
39. Trujillo, M. (2021)
    Ubiquitination and PARylation cross-talk about immunity.
    Mol. Plant, doi: 10.1016/j.molp.2021.11.009. [PubMed]
40. Trujillo, M. (2021)
    Ubiquitin signalling: controlling the message of surface immune receptors.
    New Phytol., doi: 10.1111/nph.17360. [PubMed]
41. Velasquez, S.M., Guo, X., Gallemi, M., Aryal, B., Venhuizen, P., Barbez, E., Dunser, K.A., Darino, M., Pencik, A., Novak, O., Kalyna, M., Mouille, G., Benkova, E., P Bhalerao, R., Mravec, J., and Kleine-Vehn, J. (2021)
    Xyloglucan remodeling defines auxin-dependent differential tissue expansion in plants.
    Int. J. Mol. Sci. 22: 9222. [PubMed]
42. Viczian, A., Klose, C., Hiltbrunner, A., and Nagy, F. (2021)
    Editorial: Plant phytochromes: from structure to signaling and beyond.
    Front. Plant Sci. 12: 811379. [PubMed]
43. Welsch, R., Touraev, A., and Palme, K. (2021)
    Small molecules mediate cellular reprogramming across two kingdoms.
    J. Exp. Bot. 72: 7645–7647. [PubMed]
44. Zhan, J., Steglich, C., Scholz, I., Hess, W.R., and Kirilovsky, D. (2021)
    InveRse regulation of light harvesting and photoprotection is mediated by a 3'-end-derived srna in cyanobacteria.
    Plant Cell 33: 358–380. [PubMed]

Publications 2020

(in alphabetical order; latest publications in red)

1. Aboal, J.R., Concha-Graña, E., De Nicola, F., Muniategui-Lorenzo, S., López-Mahía, P., Giordano, S., Capozzi, F., Di Palma, A., Reski, R., Zechmeister, H., Martínez-Abaigar, J., and Fernández, J.A. (2020).
   Testing a novel biotechnological passive sampler for monitoring atmospheric PAH pollution.
   J. Hazard. Mater. 381: 120949. doi: 10.1016/j.jhazmat.2019.120949
2. Alvarez-Escribano, I., Brenes-Alvarez, M., Olmedo-Verd, E., Georg, J., Hess, W.R., Vioque, A., and Muro-Pastor, A.M. (2020)
   NsiR3, a nitrogen stress inducible small RNA, regulates proline oxidase expression in the cyanobacterium Nostoc sp. PCC 7120.
   FEBS J., doi: 10.1111/febs.15516. [PubMed]
3. Arora, D., Abel, N.B., Liu, C., Van Damme, P., Yperman, K., Eeckhout, D., Vu, L.D., Wang, J., Tornkvist, A., Impens, F., Korbei, B., Van Leene, J., Goossens, A., De Jaeger, G., Ott, T., Moschou, P.N., and Van Damme, D. (2020)
   Establishment of proximity-dependent biotinylation approaches in different plant model systems.
   Plant Cell 32: 3388-3407. [PubMed]
4. Asgharzadeh, P., Birkhold, A.I., Trivedi, Z., Ozdemir, B., Reski, R., and Rohrle, O. (2020)
   A NanoFE simulation-based surrogate machine learning model to predict mechanical functionality of protein networks from live confocal imaging.
   Comput. Struct. Biotechnol. J. 18: 2774–2788. [PubMed]
5. Bohlender, L.L., Parsons, J., Hoernstein, S.N.W., Rempfer, C., Ruiz-Molina, N., Lorenz, T., Rodriguez Jahnke, F., Figl, R., Fode, B., Altmann, F., Reski, R., and Decker, E.L. (2020)
   StabLe protein sialylation in Physcomitrella.
   Front. Plant Sci. 11: 610032. [PubMed]
6. Camagna, M., and Welsch, R. (2020)
   Expression, purification, and enzyme activity assay of phytoene synthase in vitro.
   Methods Mol. Biol. 2083: 39–52. [PubMed]
7. Cheng, M.C., Enderle, B., Kathare, P.K., Islam, R., Hiltbrunner, A., and Huq, E. (2020)
   PCH1 and PCHL directly interact with PIF1, promote its degradation and inhibit its transcriptional function during photomorphogenesis.
   Mol. Plant 13: 499-514. [PubMed]
8. Conradi, F.D., Mullineaux, C.W., and Wilde, A. (2020)
   The role of the cyanobacterial type IV pilus machinery in finding and maintaining a favourable environment.
   Life (Basel). 10: E252 [PubMed]
9. de Alvarenga, L.V., Hess, W.R., and Hagemann, M. (2020)
   AcnSP - a novel small protein regulator of aconitase activity in the cyanobacterium Synechocystis sp. PCC 6803.
   Front Microbiol. 11: 1445. [PubMed]
10. Decker, E.L., and Reski, R. (2020)
    Mosses in biotechnology.
    Curr. Opin. Biotechnol. 61: 21–27. [PubMed]
11. Ditengou, F.A., Teale, W.D., and Palme, K. (2020)
    Settling for less: Do statoliths modulate gravity perception?
    Plants (Basel) 9: 121. [PubMed]
12. Du, F., Gong, W., Bosca, S., Tucker, M., Vaucheret, H., and Laux, T. (2020)
    Dose-dependent AGO1-mediated inhibition of the miRNA165/166 pathway modulates stem cell maintenance in Arabidopsis shoot apical meristem.
    Plant Commun. 1: 100002. [PubMed]
13. Heck, M.A., Luth, V.M., van Gessel, N., Krebs, M., Kohl, M., Prager, A., Joosten, H., Decker, E.L., and Reski, R. (2020)
    Axenic in vitro cultivation of 19 peat moss (Sphagnum L.) species as a resource for basic biology, biotechnology, and paludiculture.
    New Phytol., doi: 10.1111/nph.16922. [PubMed]
14. Jiang, J., Xiao, Y., Chen, H., Hu, W., Zeng, L., Ke, H., Ditengou, F.A., Devisetty, U.K., Palme, K., Maloof, J.N., and Dehesh, K. (2020)
    Retrograde induction of phyB orchestrates ethylene-auxin hierarchy to regulate growth.
    Plant Physiol. 183: 1268-1280. [PubMed]
15. Jung, J.H., Barbosa, A.D., Hutin, S., Kumita, J.R., Gao, M., Derwort, D., Silva, C.S., Lai, X., Pierre, E., Geng, F., Kim, S.B., Baek, S., Zubieta, C., Jaeger, K.E., and Wigge, P.A. (2020)
    A prion-like domain in ELF3 functions as a thermosensor in Arabidopsis.
    Nature 585: 256-260. [PubMed]
16. Kahle, N., Sheerin, D.J., Fischbach, P., Koch, L.A., Schwenk, P., Lambert, D., Rodriguez, R., Kerner, K., Hoecker, U., Zurbriggen, M.D., and Hiltbrunner, A. (2020)
    COLD REGULATED 27 and 28 are targets of CONSTITUTIVELY PHOTOMORPHOGENIC 1 and negatively affect phytochrome B signalling.
    Plant J. 104: 1038-1053. [PubMed]
17. Kneuper, I., Teale, W., Dawson, J.E., Tsugeki, R., Katifori, E., Palme, K., and Ditengou, F.A. (2020)
    Auxin biosynthesis and cellular efflux act together to regulate leaf vein patterning.
    J. Exp. Bot., doi: 10.1093/jxb/eraa501. [PubMed]
18. Koschmieder, J., and Welsch, R. (2020)
    Quantification of carotenoid pathway flux in green and nongreen systems.
    Methods Mol. Biol. 2083: 279–291. [PubMed]
19. Lambrecht, S.J., Steglich, C., and Hess, W.R. (2020)
    A minimum set of regulators to thrive in the ocean.
    FEMS Microbiol. Rev. 44: 232-252. [PubMed]
20. Lavrekha, V.V., Pasternak, T., Palme, K., and Mironova, V.V. (2020)
    3D analysis of mitosis distribution pattern in the plant root tip with iRoCS toolbox.
    Methods Mol. Biol. 2094: 119–125. [PubMed]
21. Lott, S.C., Voigt, K., Lambrecht, S.J., Hess, W.R., and Steglich, C. (2020)
    A framework for the computational prediction and analysis of non-coding RNAs in microbial environmental populations and their experimental validation.
    ISME J. 14: 1955-1965. [PubMed]
22. Mahbub, M., Hemm, L., Yang, Y., Kaur, R., Carmen, H., Engl, C., Huokko, T., Riediger, M., Watanabe, S., Liu, L.N., Wilde, A., Hess, W.R., and Mullineaux, C.W. (2020)
    mRNA localization, reaction centre biogenesis and thylakoid membrane targeting in cyanobacteria.
    Nat. Plants 6: 1179–1191. [PubMed]
23. Menon, C., Klose, C., and Hiltbrunner, A. (2020)
    Arabidopsis FAR-RED ELONGATED HYPOCOTYL 1 and FHY1-LIKE are not required for phytochrome A signal transduction in the nucleus.
    Plant Commun. 1: 100007. [PubMed]
24. Muller-Schussele, S.J., Wang, R., Gutle, D.D., Romer, J., Rodriguez-Franco, M., Scholz, M., Buchert, F., Luth, V.M., Kopriva, S., Dormann, P., Schwarzlander, M., Reski, R., Hippler, M., and Meyer, A.J. (2020)
    Chloroplasts require glutathione reductase to balance reactive oxygen species and maintain efficient photosynthesis.
    Plant J. 103: 1140-1154. [PubMed]
25. Muro-Pastor, A.M., and Hess, W.R. (2020)
    Regulatory RNA at the crossroads of carbon and nitrogen metabolism in photosynthetic cyanobacteria.
    Biochim. Biophys. Acta Gene Regul. Mech. 1863: 194477. [PubMed]
26. Ochoa-Fernandez, R., Abel, N.B., Wieland, F.G., Schlegel, J., Koch, L.A., Miller, J.B., Engesser, R., Giuriani, G., Brandl, S.M., Timmer, J., Weber, W., Ott, T., Simon, R., and Zurbriggen, M.D. (2020)
    Optogenetic control of gene expression in plants in the presence of ambient white light.
    Nat. Methods 17: 717–725. [PubMed]
27. Oliva, N., Florida Cueto-Reaño, M., Trijatmiko, K.R., Samia, M., Welsch, R., Schaub, P., Beyer, P., Mackenzie, D., Boncodin, R., Reinke, R., Slamet-Loedin, I., and Mallikarjuna Swamy, B.P. (2020)
    Molecular characterization and safety assessment of biofortified provitamin A rice.
    Sci. Rep. 10: 1376. [PubMed]
28. Orosa, B., Ustun, S., Calderon Villalobos, L.I.A., Genschik, P., Gibbs, D., Holdsworth, M.J., Isono, E., Lois, M., Trujillo, M., and Sadanandom, A. (2020)
    Plant proteostasis - shaping the proteome: a research community aiming to understand molecular mechanisms that control protein abundance.
    New Phytol. 227: 1028–1033. [PubMed]
29. Paponov, I.A., Budnyk, V., Paponov, M., Teale, W., and Palme, K. (2020)
    ButyLated hydroxytoluene (BHT) inhibits PIN1 exocytosis from BFA compartments in Arabidopsis roots.
    Front. Plant Sci. 11: 393. [PubMed]
30. Pasternak, T., Asard, H., Potters, G., and Jansen, M.A. (2014)
    The thiol compounds glutathione and homoglutathione differentially affect cell development in alfalfa (Medicago sativa L.).
    Plant Physiol. Biochem. 74: 16–23. [PubMed]
31. Pasternak, T., Lystvan, K., Betekhtin, A., and Hasterok, R. (2020)
    From single cell to plants: mesophyll protoplasts as a versatile system for investigating plant cell reprogramming.
    Int. J. Mol. Sci. 21 [PubMed]
32. Pasternak, T., Palme, K., and Paponov, I.A. (2020)
    Glutathione enhances auxin sensitivity in Arabidopsis Roots.
    Biomolecules 10 [PubMed]
33. Reimann, V., Ziemann, M., Li, H., Zhu, T., Behler, J., Lu, X., and Hess, W.R. (2020)
    Specificities and functional coordination between the two Cas6 maturation endonucleases in Anabaena sp. PCC 7120 assign orphan CRISPR arrays to three groups.
    RNA Biol. 17: 1442-1453. [PubMed]
34. Reski, R., Rybicki, E., and Foster, G. (2020)
    Editorial overview: Plant biotechnology.
    Curr. Opin. Biotechnol. 61: iii–iiv. [PubMed]
35. Rosana, A.R.R., Whitford, D.S., Migur, A., Steglich, C., Kujat-Choy, S.L., Hess, W.R., and Owttrim, G.W. (2020)
    RNA helicase-regulated processing of the SynechocystisrimO-crhR operon results in differential cistron expression and accumulation of two sRNAs.
    J. Biol. Chem. 295: 6372-6386. [PubMed]
36. Savina, M.S., Pasternak, T., Omelyanchuk, N.A., Novikova, D.D., Palme, K., Mironova, V.V., and Lavrekha, V.V. (2020)
    Cell Dynamics in WOX5-Overexpressing Root Tips: The Impact of Local Auxin Biosynthesis.
    Front. Plant Sci. 11: 560169. [PubMed]
37. Schafer, R.A., Lott, S.C., Georg, J., Gruning, B.A., Hess, W.R., and Voss, B. (2020)
    GLASSGo in Galaxy: high-throughput, reproducible and easy-to-integrate prediction of sRNA homologs.
    Bioinformatics 36: 4357-4359. [PubMed]
38. Song, S., Timm, S., Lindner, S.N., Reimann, V., Hess, W.R., Hagemann, M., and Brouwer, E.M. (2020)
    Expression of formate-tetrahydrofolate ligase did not improve growth but interferes with nitrogen and carbon metabolism of Synechocystis sp. PCC 6803.
    Front Microbiol. 11: 1650. [PubMed]
39. Sözen, C., Schenk, S.T., Boudsocq, M., Chardin, C., Almeida-Trapp, M., Krapp, A., Hirt, H., Mithöfer, A., and Colcombet, J. (2020)
    Wounding and insect feeding trigger two independent MAPK pathways with distinct regulation and kinetics.
    Plant Cell 32: 1988-2003. [PubMed]
40. Su, C., Klein, M.L., Hernández-Reyes, C., Batzenschlager, M., Ditengou, F.A., Lace, B., Keller, J., Delaux, P.M., and Ott, T. (2020)
    The Medicago truncatula DREPP protein triggers microtubule fragmentation in membrane nanodomains during symbiotic infections.
    Plant Cell 32: 1689-1702. [PubMed]
41. Su, Y.H., Zhou, C., Li, Y.J., Yu, Y., Tang, L.P., Zhang, W.J., Yao, W.J., Huang, R., Laux, T., and Zhang, X.S. (2020)
    Integration of pluripotency pathways regulates stem cell maintenance in the Arabidopsis shoot meristem.
    Proc. Natl. Acad. Sci. U. S. A. 117: 22561-22571. [PubMed]
42. Tang, L.P., Yang, Y., Wang, H., Li, L., Liu, L., Liu, Y., Yuan, J., Zhao, X.Y., Palme, K., Su, Y.H., and Li, X. (2020)
    AtNSF regulates leaf serration by modulating intracellular trafficking of PIN1 in Arabidopsis thaliana.
    J. Integr. Plant Biol., doi: 10.1111/jipb.13043. [PubMed]
43. Teale, W.D., Pasternak, T., Dal Bosco, C., Dovzhenko, A., Kratzat, K., Bildl, W., Schworer, M., Falk, T., Ruperti, B., Schaefer, J.V., Shahriari, M., Pilgermayer, L., Li, X., Lubben, F., Pluckthun, A., Schulte, U., and Palme, K. (2020)
    Flavonol-mediated stabilization of PIN efflux complexes regulates polar auxin transport.
    EMBO J.: e104416., doi: 10.15252/embj.2020104416. [PubMed]
44. Viczián, A., Ádám, É., Staudt, A.M., Lambert, D., Klement, E., Romero Montepaone, S., Hiltbrunner, A., Casal, J., Schäfer, E., Nagy, F., and Klose, C. (2020)
    Differential phosphorylation of the N-terminal extension regulates phytochrome B signaling.
    New Phytol. 225: 1635–1650. [PubMed]
45. Wallner, T., Pedroza, L., Voigt, K., Kaever, V., and Wilde, A. (2020)
    The cyanobacterial phytochrome 2 regulates the expression of motility-related genes through the second messenger cyclic di-GMP.
    Photochem. Photobiol. Sci. 19: 631-643. [PubMed]
46. Wein, A., Le Gac, A.L., and Laux, T. (2020)
    Stem cell ageing of the root apical meristem of Arabidopsis thaliana.
    Mech. Ageing Dev. 190: 111313. [PubMed]
47. Wiegard, A., Köbler, C., Oyama, K., Dörrich, A.K., Azai, C., Terauchi, K., Wilde, A., and Axmann, I.M. (2020)
    Synechocystis KaiC3 displays temperature- and KaiB-dependent ATPase activity and is important for growth in darkness.
    J. Bacteriol. 202: e00478-19. [PubMed]
48. Xu, T., Yuan, J., and Hiltbrunner, A. (2020)
    Phytochrome interacting factors in the moss Physcomitrella patens regulate light-controlled gene expression.
    Physiol. Plant. 169: 467-479. [PubMed]

Publications 2019

(in alphabetical order; latest publications in red)

1. Arif, M.A., Hiss, M., Tomek, M., Busch, H., Meyberg, R., Tintelnot, S., Reski, R., Rensing, S.A., and Frank, W. (2019)
   ABA-induced vegetative diaspore formation in Physcomitrella patens.
   Front. Plant Sci. 10: 315. [PubMed]
2. Behler, J., and Hess, W.R. (2019)
   Approaches to study CRISPR RNA biogenesis and the key players involved.
   Methods, doi: 10.1016/j.ymeth.2019.07.015. [PubMed]
3. Brenes-Álvarez, M., Mitschke, J., Olmedo-Verd, E., Georg, J., Hess, W.R., Vioque, A., and Muro-Pastor, A.M. (2019)
   Elements of the heterocyst-specific transcriptome unravelled by co-expression analysis in Nostoc sp. PCC 7120.
   Environ. Microbiol. 21: 2544–2558. [PubMed]
4. Bu, F., Rutten, L., Roswanjaya, Y.P., Kulikova, O., Rodriguez-Franco, M., Ott, T., Bisseling, T., van Zeijl, A., and Geurts, R. (2019)
   Mutant analysis in the nonlegume Parasponia andersonii identifies NIN and NF-YA1 transcription factors as a core genetic network in nitrogen-fixing nodule symbioses.
   New Phytol. 226: 541-554. [PubMed]
5. Cao, H., Luo, H., Yuan, H., Eissa, M., Thannhauser, T., Welsch, R., Hao, Y.J., Cheng, L., and Li, L. (2019)
   A neighboring aromatic-aromatic amino acid combination governs activity divergence between tomato phytoene synthases.
   Plant Physiol., 180: 1988-2003. [PubMed]
6. Chen, J., Hao, Z., Guang, X., Zhao, C., Wang, P., Xue, L., Zhu, Q., Yang, L., Sheng, Y., Zhou, Y., Xu, H., Xie, H., Long, X., Zhang, J., Wang, Z., Shi, M., Lu, Y., Liu, S., Guan, L., Zhu, Q., Yang, L., Ge, S., Cheng, T., Laux, T., Gao, Q., Peng, Y., Liu, N., Yang, S., and Shi, J. (2019)
   Liriodendron genome sheds light on angiosperm phylogeny and species-pair differentiation.
   Nat. Plants 5: 18–25. [PubMed]
7. Conradi, F.D., Zhou, R.Q., Oeser, S., Schuergers, N., Wilde, A., and Mullineaux, C.W. (2019)
   Factors controlling floc formation and structure in the cyanobacterium Synechocystis sp. PCC 6803.
   J. Bacteriol. 201: e00344-19. [PubMed]
8. Di Palma, A., González, A.G., Adamo, P., Giordano, S., Reski, R., and Pokrovsky, O.S. (2019)
   Biosurface properties and lead adsorption in a clone of Sphagnum palustre (Mosses): Towards a unified protocol of biomonitoring of airborne heavy metal pollution.
   Chemosphere 236: 124375. [PubMed]
9. Dóczi, R., Hatzimasoura, E., Farahi Bilooei, S., Ahmad, Z., Ditengou, F.A., López-Juez, E., Palme, K., and Bögre, L. (2019)
   The MKK7-MKP6 MAP kinase module is a regulator of meristem quiescence or active growth in Arabidopsis.
   Front. Plant Sci. 10: 202. [PubMed]
10. Du, F., Gong, W., Boscá, S., Tucker, M.,Vaucheret, H., and Laux, T. (2019)
    Dose-dependent AGO1-mediated inhibition of the miRNA165/166 pathway modulates stem cell maintenance in Arabidopsis shoot apical meristem.
    Plant Comm., 100002. doi: 10.1016/j.xplc.2019.100002
11. Falk, T., Mai, D., Bensch, R., Çiçek, Ö., Abdulkadir, A., Marrakchi, Y., Böhm, A., Deubner, J., Jäckel, Z., Seiwald, K., Dovzhenko, A., Tietz, O., Dal Bosco, C., Walsh, S., Saltukoglu, D., Tay, T.L., Prinz, M., Palme, K., Simons, M., Diester, I., Brox, T., and Ronneberger, O. (2019)
    u-net: deep learning for cell counting, detection, and morphometry.
    Nat. Methods 16: 67–70. [PubMed]
12. Gärtner, K., Klähn, S., Watanabe, S., Mikkat, S., Scholz, I., Hess, W.R., and Hagemann, M. (2019)
    Cytosine N4-methylation via M.Ssp6803II is involved in the regulation of transcription, fine-tuning of DNA replication and DNA repair in the cyanobacterium Synechocystis sp. PCC 6803.
    Front. Microbiol. 10: 1233. [PubMed]
13. Georg, J., Lalaouna, D., Hou, S., Lott, S.C., Caldelari, I., Marzi, S., Hess, W.R., and Romby, P. (2019)
    The power of cooperation: Experimental and computational approaches in the functional characterization of bacterial sRNAs.
    Mol. Microbiol. 113: 603-612. [PubMed]
14. Georg, J., Rosana, A.R.R., Chamot, D., Migur, A., Hess, W.R., and Owttrim, G.W. (2019)
    Inactivation of the RNA helicase CrhR impacts a specific subset of the transcriptome in the cyanobacterium Synechocystis sp. PCC 6803.
    RNA Biol 16: 1205–1214. [PubMed]
15. Georgii, E., Kugler, K.G., Pfeifer, M., Vanzo, E., Block, K., Domagalska, M.A., Jud, W., AbdElgawad, H., Asard, H., Reinhardt, R., Hansel, A., Spannagl, M., Schaeffner, A.R., Palme, K., Mayer, K., and Schnitzler, J.P. (2019)
    The systems architecture of molecular memory in poplar after abiotic stress.
    Plant Cell 31: 346–367. [PubMed]
16. Grabsztunowicz, M., Mulo, P., Baymann, F., Mutoh, R., Kurisu, G., Sétif, P., Beyer, P., and Krieger-Liszkay, A. (2019)
    Electron transport pathways in isolated chromoplasts from Narcissus pseudonarcissus L.
    Plant J. 99: 245–256. [PubMed]
17. Hiltbrunner, A. (2019)
    Shedding light on the evolution of light signalling.
    New Phytol. 224: 1412–1414. [PubMed]
18. Hiltbrunner, A. (2019).
    Phytochromes.
    Methods and Protocols (Springer, New York, NY). doi: 10.1007/978-1-4939-9612-4
19. Jaillais, Y., and Ott, T. (2019)
    The nanoscale organization of the plasma membrane and its importance in signaling - a proteolipid perspective.
    Plant Physiol. 182: 1682-1696. [PubMed]
20. Jakob, A., Nakamura, H., Kobayashi, A., Sugimoto, Y., Wilde, A., and Masuda, S. (2019)
    The (PATAN)-Chey-like response regulator PixE interacts with the motor ATPase PilB1 to control negative phototaxis in the cyanobacterium Synechocystis sp. pcc 6803.
    Plant Cell Physiol. 61: 296-307. [PubMed]
21. Klose, C. (2019).
    In vivo spectroscopy.
    Methods Mol. Biol., pp. 113–120. [PubMed]
22. Klose, C., Nagy, F., and Schäfer, E. (2019)
    Thermal reversion of plant phytochromes.
    Mol. Plant 13: 386-397. [PubMed]
23. Krynicka, V., Georg, J., Jackson, P.J., Dickman, M.J., Hunter, C.N., Futschik, M.E., Hess, W.R., and Komenda, J. (2019)
    Depletion of the FtsH1/3 proteolytic complex suppresses the nutrient stress response in the cyanobacterium Synechocystis PCC6803.
    Plant Cell 31: 2912–2928. [PubMed]
24. Kubatova, N., Pyper, D.J., Jonker, H.R.A., Saxena, K., Remmel, L., Richter, C., Brantl, S., Evguenieva-Hackenberg, E., Hess, W.R., Klug, G., Marchfelder, A., Soppa, J., Streit, W., Mayzel, M., Orekhov, V.Y., Fuxreiter, M., Schmitz, R.A., and Schwalbe, H. (2019)
    Rapid biophysical characterization and NMR spectroscopy structural analysis of small proteins from bacteria and archaea.
    Chembiochem 21: 1178-1187. [PubMed]
25. Kubo, M., Nishiyama, T., Tamada, Y., Sano, R., Ishikawa, M., Murata, T., Imai, A., Lang, D., Demura, T., Reski, R., and Hasebe, M. (2019)
    Single-cell transcriptome analysis of Physcomitrella leaf cells during reprogramming using microcapillary manipulation.
    Nucleic Acids Res. 47: 4539–4553. [PubMed]
26. Le Gac, A.L., and Laux, T. (2019)
    Hypoxia is a developmental regulator in plant meristems.
    Mol. Plant 12: 1422–1424. [PubMed]
27. Malkowsky, Y., Ostendorf, A.K., van Gessel, N., Nguyen, L., Lang, D., Menges, A., Roth-Nebelsick, A., and Reski, R. (2019).
    Evolutive approaches to explorative design methods in architecture.
    In Biomimetics for Architecture, J. Knippers, U. Schmid, and T. Speck, eds (De Gruyter: Berlin, Boston), pp. 134–141. doi: 10.1515/9783035617917-017.
Maury, S., Sow, M.D., Le Gac, A.L., Genitoni, J., Lafon-Placette, C., and Mozgova, I. (2019)
Phytohormone and chromatin crosstalk: the missing link for developmental plasticity?
Front. Plant Sci. 10: 395. [PubMed]
28. Nogueira, M., Enfissi, E.M.A., Welsch, R., Beyer, P., Zurbriggen, M.D., and Fraser, P.D. (2019)
    Construction of a fusion enzyme for astaxanthin formation and its characterisation in microbial and plant hosts: A new tool for engineering ketocarotenoids.
    Metab. Eng. 52: 243–252. [PubMed]
29. Özdemir, B., Asgharzadeh, P., Birkhold, A., Röhrle, O., and Reski, R. (2019).
    The plastid skeleton: a source of ideas in the nano range.
    In Biomimetics for Architecture, J. Knippers, U. Schmid, and T. Speck, eds (De Gruyter: Berlin, Boston), pp. 163–166. doi: 10.1515/9783035617917-021.
30. Paponov, I.A., Dindas, J., Król, E., Friz, T., Budnyk, V., Teale, W., Paponov, M., Hedrich, R., and Palme, K. (2018)
    Auxin-induced plasma membrane depolarization is regulated by auxin transport and not by AUXIN BINDING PROTEIN1.
    Front. Plant Sci. 9: 1953. [PubMed]
31. Paponov, I.A., Friz, T., Budnyk, V., Teale, W., Wüst, F., Paponov, M., Al-Babili, S., and Palme, K. (2019)
    Natural auxin does not inhibit Brefeldin a induced PIN1 and PIN2 internalization in root cells.
    Front. Plant Sci. 10: 574. [PubMed]
32. Pasternak, T., and Dudits, D. (2019)
    Epigenetic Clues to Better Understanding of the Asexual Embryogenesis in planta and in vitro.
    Front Plant Sci. 10: 778. [PubMed]
33. Pasternak, T., Groot, E.P., Kazantsev, F., Teale, W., Omelyanchuk, N., Kovrizhnykh, V., Palme, K., and Mironova, V.V. (2019)
    Salicylic acid affects root meristem patterning via auxin distribution in a concentration-dependent manner.
    Plant Physiol. 180: 1725–1739. [PubMed]
34. Riediger, M., Kadowaki, T., Nagayama, R., Georg, J., Hihara, Y., and Hess, W.R. (2019)
    Biocomputational analyses and experimental validation identify the regulon controlled by the redox-responsive transcription factor RpaB.
    iScience 15: 316–331. [PubMed]
35. Scholz, I., Lott, S.C., Behler, J., Gärtner, K., Hagemann, M., and Hess, W.R. (2019)
    Divergent methylation of CRISPR repeats and cas genes in a subtype I-D CRISPR-Cas-system.
    BMC Microbiol. 19: 147. [PubMed]
36. Shang, J.L., Chen, M., Hou, S., Li, T., Yang, Y.W., Li, Q., Jiang, H.B., Dai, G.Z., Zhang, Z.C., Hess, W.R., and Qiu, B.S. (2019)
    Genomic and transcriptomic insights into the survival of the subaerial cyanobacterium Nostoc flagelliforme in arid and exposed habitats.
    Environ. Microbiol., 21: 845–863. [PubMed]
37. Sheerin, D.J. (2019).
    Investigation of light-regulated protein-protein interactions using yeast two-hybrid assays.
    Methods Mol. Biol., pp. 1–19. [PubMed]
38. Teikari, J.E., Popin, R.V., Hou, S., Wahlsten, M., Hess, W.R., and Sivonen, K. (2019)
    Insight into the genome and brackish water adaptation strategies of toxic and bloom-forming Baltic Sea Dolichospermum sp. UHCC 0315.
    Sci. Rep. 9: 4888. [PubMed]
39. Top, O., Geisen, U., Decker, E.L., and Reski, R. (2019)
    Critical evaluation of strategies for the production of blood coagulation factors in plant-based systems.
    Front. Plant Sci. 10: 261. [PubMed]
40. Top, O., Parsons, J., Bohlender, L.L., Michelfelder, S., Kopp, P., Busch-Steenberg, C., Hoernstein, S.N.W., Zipfel, P.F., Häffner, K., Reski, R., and Decker, E.L. (2019)
    Recombinant production of MFHR1, a novel synthetic multitarget complement inhibitor, in moss bioreactors.
    Front. Plant Sci. 10: 260. [PubMed]
41. Saeed, B., Brillada, C., and Trujillo, M. (2019)
    Dissecting the plant exocyst.
    Curr. Opin. Plant Biol. 52: 69–76. [PubMed]
42. Vijay, D., Akhtar, M.K., and Hess, W.R. (2019)
    Genetic and metabolic advances in the engineering of cyanobacteria.
    Curr. Opin. Biotechnol. 59: 150–156. [PubMed]
43. Wang, L., Sun, Z., Su, C., Wang, Y., Yan, Q., Chen, J., Ott, T., and Li, X. (2019)
    A GmNINa-miR172c-NNC1 Regulatory Network Coordinates the Nodulation and Autoregulation of Nodulation Pathways in Soybean.
    Mol Plant 12: 1211–1226. [PubMed]
44. Welsch, R., Zhou, X., Koschmieder, J., Schlossarek, T., Yuan, H., Sun, T., and Li, L. (2019)
    Characterization of cauliflower OR mutant variants.
    Front. Plant Sci. 10: 1716. [PubMed]
45. Xu, D., Marino, G., Klingl, A., Enderle, B., Monte, E., Kurth, J., Hiltbrunner, A., Leister, D., and Kleine, T. (2019)
    Extrachloroplastic PP7L functions in chloroplast development and abiotic stress tolerance.
    Plant Physiol. 180: 323–341. [PubMed]
46. Yousefi, O.S., Günther, M., Hörner, M., Chalupsky, J., Wess, M., Brandl, S.M., Smith, R.W., Fleck, C., Kunkel, T., Zurbriggen, M.D., Höfer, T., Weber, W., and Schamel, W.W. (2019)
    Optogenetic control shows that kinetic proofreading regulates the activity of the T cell receptor.
    Elife 8: e42475. [PubMed]
47. Zhao, W., Li, Z., Hu, Y., Wang, M., Zheng, S., Li, Q., Wang, Y., Xu, L., Li, X., Zhu, R., Reski, R., and Sun, Y. (2019)
    Development of a method for protonema proliferation of peat moss (Sphagnum squarrosum) through regeneration analysis.
    New Phytol., 221: 1160–1171. [PubMed]

Publications 2018

(in alphabetical order; latest publications in red)

1. Angeleri, M., Muth-Pawlak, D., Wilde, A., Aro, E.M., and Battchikova, N. (2018)
   Global proteome response of Synechocystis 6803 to extreme copper environments applied to control the activity of the inducible petJ promoter.
   J. Appl. Microbiol., 126: 826–841. [PubMed]
2. Asgharzadeh, P., Özdemir, B., Reski, R., Röhrle, O., and Birkhold, A.I. (2018).
   Computational 3D imaging to quantify structural components and assembly of protein networks.
   Acta Biomater., 15: 206–217. [PubMed]
3. Baba, A.I., Rigó, G., Ayaydin, F., Rehman, A.U., Andrási, N., Zsigmond, L., Valkai, I, Urbancsok, J.1., Vass, I., Pasternak, T., Palme, K., Szabados, L., and Cséplő Á. (2018).
   Functional analysis of the Arabidopsis thaliana CDPK-related kinase family: AtCRK1 regulates responses to continuous light.
   Int. J. Mol. Sci. 19, pii: E1282. [PubMed]
4. Barshishat, S., Elgrably-Weiss, M., Edelstein, J., Georg, J., Govindarajan, S., Haviv, M., Wright, P.R., Hess, W.R., and Altuvia, S. (2018)
   OxyS small RNA induces cell cycle arrest to allow DNA damage repair.
   EMBO J. 37: 413–426. [PubMed]
5. Behler, J., Sharma, K., Reimann, V., Wilde, A., Urlaub, H., and Hess, W.R. (2018).
   The host-encoded RNase E endonuclease as the crRNA maturation enzyme in a CRISPR-Cas subtype III-Bv system.
   Nat. Microbiol. 3: 367–377. [PubMed]
6. Behler, J., Vijay, D., Hess, W.R., and Akhtar, M.K. (2018)
   CRISPR-based technologies for metabolic engineering in cyanobacteria.
   Trends Biotechnol., 36: 996–1010. [PubMed]
7. Bender, J., Bognar, S., Camagna, M., Donauer, J.A.M., Eble, J.W., Emig, R., Fischer, S., Jesser, R., Keilholz, L., Kokotek, D.M.U., Neumann, J., Nicklaus, S., Oude Weernink, R.R.Q.P.T., Stühn, L.G., Wössner, N., Krämer, S.D., Schwenk, P., Gensch, N., Roth, G., and Ulbrich, M.H. (2018)
   Multiplexed antibody detection from blood sera by immobilization of in vitro expressed antigens and label-free readout via imaging reflectometric interferometry (iRIf).
   Biosens. Bioelectron. 115: 97–103. [PubMed]
8. Beyer, H.M., Engesser, R., Hörner, M., Koschmieder, J., Beyer, P., Timmer, J., Zurbriggen, M.D., and Weber, W. (2018)
   Synthetic biology makes polymer materials count.
   Adv. Mater. Weinheim 30: e1800472. [PubMed]
9. Biedermann, S., and Laux, T. (2018)
   Plant development: Adding HAM to stem cell control.
   Curr. Biol. 28: R1261–R1263. [PubMed]
10. Camagna, M., Grundmann, A., Bär, C., Koschmieder, J., Beyer, P., and Welsch, R. (2018)
    Enzyme fusion removes competition for geranylgeranyl diphosphate in carotenogenesis.
    Plant Physiol., doi: 10.1104/pp.18.01026. [PubMed]
11. Chuprov-Netochin, R., Marusich, E., Neskorodov, Y., Mishutkina, Y., Volynchuk, P., Ivanenkov, Y., Touraev, A., Leonov, S., and Palme, K. (2018)
    Method for ultrarapid high-content screening for biologically active chemicals using plant pollen.
    Methods Mol. Biol. 1795: 27–37. [PubMed]
12. David, C., Schmid, A., Adrian, L., Wilde, A., and Bühler, K. (2018)
    Production of 1,2-propanediol in photoautotrophic Synechocystis is linked to glycogen turn-over.
    Biotechnol. Bioeng. 115: 300–311. [PubMed]
13. Dindas, J., Scherzer, S., Roelfsema, M.R.G., von Meyer, K., Müller, H.M., Al-Rasheid, K.A.S., Palme, K., Dietrich, P., Becker, D., Bennett, M.J., and Hedrich, R. (2018).
    AUX1-mediated root hair auxin influx governs SCF^TR1/AFB-type Ca²⁺ signaling.
    Nat. Commun. 9: 1174. [PubMed]
14. Ditengou, F.A., Gomes, D., Nziengui, H., Kochersperger, P., Lasok, H., Medeiros, V., Paponov, I.A., Nagy, S.K., Nádai, T.V., Mészáros, T., Barnabás, B., Ditengou, B.I., Rapp, K., Qi, L., Li, X., Becker, C., Li, C., Dóczi, R., and Palme, K. (2018).
    Characterization of auxin transporter PIN6 plasma membrane targeting reveals a function for PIN6 in plant bolting.
    New Phytol. 217: 1610–1624. [PubMed]
15. Dory, M., Hatzimasoura, E., Kállai, B.M., Nagy, S.K., Jäger, K., Darula, Z., Nádai, T.V., Mészáros, T., López-Juez, E., Barnabás, B., Palme, K., Bögre, L., Ditengou, F.A., and Dóczi, R. (2018)
    Coevolving MAPK and PID phosphosites indicate an ancient environmental control of PIN auxin transporters in land plants.
    FEBS Lett. 592: 89–102. [PubMed]
16. Fang, X., Liu, Y., Zhao, Y., Chen, Y., Liu, R., Qin, Q.L., Li, G., Zhang, Y.Z., Chan, W., Hess, W.R., and Zeng, Q. (2018)
    transcriptomic responses of the marine cyanobacterium prochlorococcus to viral lysis products.
    Environ. Microbiol., doi: 10.1111/1462-2920.14513. [PubMed]
17. Georg, J., and Hess, W.R. (2018)
    Widespread antisense transcription in prokaryotes.
    Microbiol. Spectr. 6, doi: 10.1128/microbiolspec.RWR-0029-2018. [PubMed]
18. Grima, R., Sonntag, S., Venezia, F., Kircher, S., Smith, R.W., and Fleck, C. (2018).
    Insight into nuclear body formation of phytochromes through stochastic modelling and experiment.
    Phys. Biol. 15: 056003. [PubMed]
19. Grossmann, G., Krebs, M., Maizel, A., Stahl, Y., Vermeer, J.E.M., and Ott, T. (2018).
    Green light for quantitative live-cell imaging in plants.
    J. Cell. Sci. 131, pii: jcs209270. [PubMed]
20. Hagemann, M., Gärtner, K., Scharnagl, M., Bolay, P., Lott, S.C., Fuss, J., Huettel, B., Reinhardt, R., Klähn, S., and Hess, W.R. (2018)
    Identification of the DNA methyltransferases establishing the methylome of the cyanobacterium Synechocystis sp. PCC 6803.
    DNA Res., 25: 343–352. [PubMed]
21. > Hoernstein, S.N.W., Fode, B., Wiedemann, G., Lang, D., Niederkrueger, H., Berg, B., Schaaf, A., Frischmuth, T., Schlosser, A., Decker, E.L., and Reski, R. (2018)
    The host cell proteome of Physcomitrella patens harbours proteases and protease inhibitors under bioproduction conditions.
    J. Proteome Res., 17: 3749–3760. [PubMed]
22. Hou, S., Brenes-Álvarez, M., Reimann, V., Alkhnbashi, O.S., Backofen, R., Muro-Pastor, A.M., and Hess, W.R. (2018)
    CRISPR-Cas systems in multicellular cyanobacteria.
    RNA Biol., 15: 1–12. [PubMed]
23. Hou, S., López-Pérez, M., Pfreundt, U., Belkin, N., Stüber, K., Huettel, B., Reinhardt, R., Berman-Frank, I., Rodriguez-Valera, F., and Hess, W.R. (2018)
    Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise.
    ISME J 12: 981–996. [PubMed]
24. Jesser, R., Behler, J., Benda, C., Reimann, V., and Hess, W.R. (2018)
    Biochemical analysis of the Cas6-1 RNA endonuclease associated with the subtype I-D CRISPR-Cas system in Synechocystis sp. PCC 6803.
    RNA Biol., 26: 1–11. [PubMed]
25. Jiang, J., Rodriguez-Furlan, C., Wang, J.Z., de Souza, A., Ke, H., Pasternak, T., Lasok, H., Ditengou, F.A., Palme, K., and Dehesh, K. (2018)
    Interplay of the two ancient metabolites auxin and MEcPP regulates adaptive growth.
    Nat. Commun. 9: 2262. [PubMed]
26. Kieper, S.N., Almendros, C., Behler, J., McKenzie, R.E., Nobrega, F.L., Haagsma, A.C., Vink, J.N.A., Hess, W.R., and Brouns, S.J.J. (2018)
    Cas4 facilitates PAM-compatible spacer selection during CRISPR adaptation.
    Cell Rep. 22: 3377–3384. [PubMed]
27. Kircher, S., and Schopfer, P. (2018)
    The plant hormone auxin beats the time for oscillating, light-regulated lateral root induction.
    Development, doi: 10.1242/dev.169839. [PubMed]
28. Klähn, S., Bolay, P., Wright, P.R., Atilho, R.M., Brewer, K.I., Hagemann, M., Breaker, R.R., and Hess, W.R. (2018)
    A glutamine riboswitch is a key element for the regulation of glutamine synthetase in cyanobacteria.
    Nucleic Acids Res., 46: 10082–10094. [PubMed]
29. Köbler, C., Schultz, S.J., Kopp, D., Voigt, K., and Wilde, A. (2018)
    The role of the Synechocystis sp. PCC 6803 homolog of the circadian clock output regulator RpaA in day-night transitions.
    Mol. Microbiol., 110: 847–861. [PubMed]
30. Kowarschik, K., Hoehenwarter, W., Marillonnet, S., and Trujillo, M. (2018).
    UbiGate: a synthetic biology toolbox to analyse ubiquitination.
    New Phytol. 217: 1749–1763. [PubMed]
31. Lace, B. and Ott, T. (2018).
    Commonalities and differences in controlling multipartite intracellular infections of legume roots by symbiotic microbes.
    Plant Cell Physiol. 59: 661–672. [PubMed]
32. Lang, D., Ullrich, K.K., Murat, F., Fuchs, J., Jenkins, J., Haas, F.B., Piednoel, M., Gundlach, H., Van Bel, M., Meyberg, R., Vives, C., Morata, J., Symeonidi, A., Hiss, M., Muchero, W., Kamisugi, Y., Saleh, O., Blanc, G., Decker, E.L., van Gessel, N., Grimwood, J., Hayes, R.D., Graham, S.W., Gunter, L.E., McDaniel, S., Hoernstein, S.N.W., Larsson, A., Li, F.W., Perroud, P.F., Phillips, J., Ranjan, P., Rokshar, D.S., Rothfels, C.J., Schneider, L., Shu, S., Stevenson, D.W., Thümmler, F., Tillich, M., Villarreal, A.J.C., Widiez, T., Wong, G.K., Wymore, A., Zhang, Y., Zimmer, A.D., Quatrano, R.S., Mayer, K.F.X., Goodstein, D., Casacuberta, J.M., Vandepoele, K., Reski, R., Cuming, A.C., Tuskan, J., Maumus, F., Salse, J., Schmutz, J., and Rensing, S.A. (2018).
    The P. patens chromosome-scale assembly reveals moss genome structure and evolution.
    Plant J. 93: 515–533. [PubMed]
33. Liang, P., Stratil, T.F., Popp, C., Marín, M., Folgmann, J., Mysore, K.S., Wen, J., and Ott, T. (2018).
    Symbiotic root infections in Medicago truncatula require remorin-mediated receptor stabilization in membrane nanodomains.
    Proc. Natl. Acad. Sci. U. S. A. 15: 5289–5294. [PubMed]
34. Lloyd, J.P.B., Lang, D., Zimmer, A.D., Causier, B., Reski, R., and Davies, B. (2018)
    The loss of SMG1 causes defects in quality control pathways in Physcomitrella patens.
    Nucleic Acids Res. 46: 5822–5836. [PubMed]
35. Lott, S.C., Schäfer, R.A., Mann, M., Backofen, R., Hess, W.R., Voß, B., and Georg, J. (2018)
    GLASSgo - automated and reliable detection of sRNA homologs from a single input sequence.
    Front. Genet. 9: 124. [PubMed]
36. Lora, J., Laux, T., and Hormaza, J.I. (2018)
    The role of the integuments in pollen tube guidance in flowering plants.
    New Phytol., 221: 1074–1089. [PubMed]
37. Michelfelder, S., Fischer, F., Wäldin, A., Hörle, K.V., Pohl, M., Parsons, J., Reski, R., Decker, E.L., Zipfel, P.F., Skerka, C., and Häffner, K. (2018).
    The MFHR1 fusion protein is a novel synthetic multitarget complement inhibitor with therapeutic potential.
    J. Am. Soc. Nephrol., 29: 1141–1153. [PubMed]
38. Middleton, A. M.^#, Dal Bosco, C.^#, Chlap, P., Bensch, R., Harz, H., Ren, F., Bergmann, S., Wend, S., Weber, W., Hayashi, K., Zurbriggen, M.D., Uhl, R., Ronneberger, O., Palme, K.^*, Fleck, C.^*, Dovzhenko, A.^* (2018).
    Data-driven modeling of intracellular auxin fluxes indicates a dominant role of the ER in controlling nuclear auxin uptake.
    Cell Reports 22: 3044–3057. [PubMed]
39. Mohammed, B., Bilooei, S.F., Dóczi, R., Grove, E., Railo, S., Palme, K., Ditengou, F.A., Bögre, L., and López-Juez, E. (2018).
    Converging light, energy and hormonal signaling control meristem activity, leaf initiation, and growth.
    Plant Physiol. 176: 1365–1381. [PubMed]
40. Nziengui, H., Lasok, H., Kochersperger, P., Ruperti, B., Rébeillé, F., Palme, K., and Ditengou, F.A. (2018)
    Root gravitropism is regulated by a crosstalk between para-aminobenzoic acid, ethylene, and auxin.
    Plant Physiol., 178: 1370–1389. [PubMed]
41. Pasternak, T., Teale, W., Falk, T., Ruperti, B., and Palme, K. (2018).
    A PLA-iRoCS pipeline for the localization of protein-protein interactions in situ.
    Methods Mol. Biol. 1787: 161–170. [PubMed]
42. Perroud, P.F., Haas, F.B., Hiss, M., Ullrich, K.K., Alboresi, A., Amirebrahimi, M., Barry, K., Bassi, R., Bonhomme, S., Chen, H., Coates, J.C., Fujita, T., Guyon-Debast, A., Lang, D., Lin, J., Lipzen, A., Nogué, F., Oliver, M.J., Ponce de León, I., Quatrano, R.S., Rameau, C., Reiss, B., Reski, R., Ricca, M., Saidi, Y., Sun, N., Szövényi, P., Sreedasyam, A., Grimwood, J., Stacey, G., Schmutz, J., and Rensing, S.A. (2018)
    The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data.
    Plant J. 95: 168–182. [PubMed]
43. Özdemir, B., Asgharzadeh, P., Birkhold, A.I., Mueller, S.J., Röhrle, O., and Reski, R. (2018)
    Cytological analysis and structural quantification of FtsZ1-2 and FtsZ2-1 network characteristics in Physcomitrella patens.
    Sci. Rep. 8: 11165. [PubMed]
44. Rajaraman, J., Douchkov, D., Lück, S., Hensel, G., Nowara, D., Pogoda, M., Rutten, T., Meitzel, T., Brassac, J., Höfle, C., Hückelhoven, R., Klinkenberg, J., Trujillo, M., Bauer, E., Schmutzer, T., Himmelbach, A., Mascher, M., Lazzari, B., Stein, N., Kumlehn, J., and Schweizer, P. (2018)
    Evolutionarily conserved partial gene duplication in the Triticeae tribe of grasses confers pathogen resistance.
    Genome Biol. 19: 116. [PubMed]
45. Reski, R. (2018)
    Quantitative moss cell biology.
    Curr. Opin. Plant Biol. 46: 39–47. [PubMed]
46. Reski, R. (2018).
    Enabling the water-to-land transition.
    Nat. Plants 4: 67–68. [PubMed]
47. Reski, R., Bae, H., and Simonsen, H.T. (2018)
    Physcomitrella patens, a versatile synthetic biology chassis.
    Plant Cell Rep., 37: 1409–1417. [PubMed]
48. Robert, H.S., Park, C., Gutièrrez, C.L., Wójcikowska, B., Pěnčík, A., Novák, O., Chen, J., Grunewald, W., Dresselhaus, T., Friml, J., and Laux, T. (2018)
    Maternal auxin supply contributes to early embryo patterning in Arabidopsis.
    Nat. Plants, 4: 548–553. [PubMed]
49. Rübsam, H., Kirsch, F., Reimann, V., Erban, A., Kopka, J., Hagemann, M., Hess, W.R., and Klähn, S. (2018)
    The iron-stress activated RNA 1 (IsaR1) coordinates osmotic acclimation and iron starvation responses in the cyanobacterium Synechocystis sp. PCC 6803.
    Environ. Microbiol., 20: 2757–2768. [PubMed]
50. Sanchez, E., Artuso, E., Lombardi, C., Visentin, I., Lace, B., Saeed, W., Lolli, M.L., Kobauri, P., Ali, Z., Spyrakis, F., Cubas, P., Cardinale, F., and Prandi, F. (2018).
    New insights into structure activity relationship of strigolactones via a novel, quantitative in planta bioassay.
    J. Exp. Bot. 69: 2333–2343. [PubMed]
51. Schaaf, A., Tschogonov, T., Michelfelder, S., Krieghoff, N., Koch, J., Busch, A., Dabrowska-Schlepp, P., Bohlender, L., Parsons, J., Decker, E.L., Reski, R., Haeffner, K., and Frischmuth, T. (2018).
    Moss-made complement therapeutics.
    Mol. Immunol. 102: 209. doi: 10.1016/j.molimm.2018.06.203
52. Schaub, P., Rodriguez-Franco, M., Cazzonelli, C.I., Álvarez, D., Wüst, F., and Welsch, R. (2018).
    Establishment of an Arabidopsis callus system to study the interrelations of biosynthesis, degradation and accumulation of carotenoids.
    PLOS One 13: e0192158. [PubMed]
53. Schorsch, M., Kramer, M., Goss, T., Eisenhut, M., Robinson, N., Osman, D., Wilde, A., Sadaf, S., Brückler, H., Walder, L., Scheibe, R., Hase, T., and Hanke, G.T. (2018)
    A unique ferredoxin acts as a player in the low-iron response of photosynthetic organisms.
    Proc. Natl. Acad. Sci. U.S.A., 115:E12111–E12120. [PubMed]
54. Shah, S.A., Alkhnbashi, O.S., Behler, J., Han, W., She, Q., Hess, W.R., Garrett, R.A., and Backofen, R. (2018)
    Comprehensive search for accessory proteins encoded with archaeal and bacterial type III CRISPR-CAS gene cassettes reveals 39 new CAS gene families.
    RNA Biol., 19: 1–13. [PubMed]
55. Stauder, R., Welsch, R., Camagna, M., Kohlen, W., Balcke, G.U., Tissier, A., and Walter, M.H. (2018).
    Strigolactone levels in dicot roots are determined by an ancestral symbiosis-regulated clade of the PHYTOENE SYNTHASE gene family.
    Front Plant Sci. 9: 255. [PubMed]
56. Tan, X., Hou, S., Song, K., Georg, J., Klähn, S., Lu, X., and Hess, W.R. (2018)
    The primary transcriptome of the fast-growing cyanobacterium Synechococcus elongatus UTEX 2973.
    Biotechnol. Biofuels 11: 218. [PubMed]
57. Teale, W. and Palme, K. (2018).
    Naphthylphthalamic acid and the mechanism of polar auxin transport.
    J. Exp. Bot. 69: 303–312. [PubMed]
58. Teikari, J.E., Fewer, D.P., Shrestha, R., Hou, S., Leikoski, N., Mäkelä, M., Simojoki, A., Hess, W.R., and Sivonen, K. (2018)
    Strains of the toxic and bloom-forming Nodularia spumigena (cyanobacteria) can degrade methylphosphonate and release methane.
    ISME J. 12: 1619–1630. [PubMed]
59. Teikari, J.E., Hou, S., Wahlsten, M., Hess, W.R., and Sivonen, K. (2018)
    Comparative genomics of the baltic sea toxic cyanobacteria Nodularia spumigena UHCC 0039 and its response to varying salinity.
    Front. Microbiol. 9: 356. [PubMed]
60. Toplak, M., Wiedemann, G., Ulićević, J., Daniel, B., Hoernstein, S.N.W., Kothe, J., Niederhauser, J., Reski, R., Winkler, A., and Macheroux, P. (2018)
    The single berberine bridge enzyme homolog of Physcomitrella patens is a cellobiose oxidase.
    FEBS J. 285: 1923–1943. [PubMed]
61. Turek, I., Tischer, N., Lassig, R., and Trujillo, M. (2018)
    Multi-tiered pairing selectivity between E2 ubiquitin-conjugating enzymes and E3 ligases.
    J. Biol. Chem., 293: 16324–16336. [PubMed]
62. Weise, S.C., Arumugam, G., Villarreal, A., Videm, P., Heidrich, S., Nebel, N., Dumit, V.I., Sananbenesi, F., Reimann, V., Craske, M., Schilling, O., Hess, W.R., Fischer, A., Backofen, R., and Vogel, T. (2018)
    FOXG1 regulates PRKAR2B transcriptionally and posttranscriptionally via miR200 in the adult hippocampus.
    Mol. Neurobiol., doi: 10.1007/s12035-018-1444-7. [PubMed]
63. Welsch, R., Zhou, X., Yuan, H., Álvarez, D., Sun, T., Schlossarek, D., Yang, Y., Shen, G., Zhang, H., Rodriguez-Concepcion, M., Thannhauser, T.W., and Li, L. (2018)
    Clp protease and OR directly control the proteostasis of phytoene synthase, the crucial enzyme for carotenoid biosynthesis in Arabidopsis.
    Mol. Plant 11: 149–162. [PubMed]
64. Wiedemann, G., Gessel, N. van, Köchl, F., Hunn, L., Schulze, K., Maloukh, L., Nogué, F., Decker, E.L., Hartung, F., and Reski, R. (2018).
    RecQ helicases function in development, DNA repair, and gene targeting in Physcomitrella patens.
    Plant Cell 30: 717–736. [PubMed]
65. Yang, Y., Lam, V., Adomako, M., Simkovsky, R., Jakob, A., Rockwell, N.C., Cohen, S.E., Taton, A., Wang, J., Lagarias, J.C., Wilde, A., Nobles, D.R., Brand, J.J., and Golden, S.S. (2018)
    Phototaxis in a wild isolate of the cyanobacterium Synechococcus elongatus.
    Proc. Natl. Acad. Sci. U.S.A., 115:E12378–E12387. [PubMed]
66. Zer, H., Margulis, K., Georg, J., Shotland, Y., Kostova, G., Sultan, L.D., Hess, W.R., and Keren, N. (2018)
    Resequencing of a mutant bearing an iron starvation recovery phenotype defines Slr1658 as a new player in the regulatory network of a model cyanobacterium.
    Plant J. 93: 235–245. [PubMed]
67. Zhang, N., and Laux, T. (2018)
    Epigenetically jump starting de novo shoot regeneration.
    EMBO J., doi: 10.15252/embj.2018100596. [PubMed]

Publications 2017

(in alphabetical order)

1. Angerer, V., Essen, L.O., and Wilde, A. (2017)
   Analysis of c-di-GMP levels synthesized by a photoreceptor protein in response to different light qualities using an in vitro enzymatic assay.
   Methods Mol. Biol. 1657: 187–204. [PubMed]
2. Angerer, V., Schwenk, P., Wallner, T., Kaever, V., Hiltbrunner, A., and Wilde, A. (2017).
   The protein Slr1143 is an active diguanylate cyclase in Synechocystis sp. PCC 6803 and interacts with the photoreceptor Cph2.
   Microbiology 163: 920–930. [PubMed]
3. Bruno, M., Vermathen, M., Alder, A., Wüst, F., Schaub, P., van der Steen, R., Beyer, P., Ghisla, S., and Al-Babili, S. (2017).
   Insights into the formation of carlactone from in-depth analysis of the CCD8-catalyzed reactions.
   FEBS Lett. 591: 792–800. [PubMed]
4. Brausemann, A., Gemmecker, S., Koschmieder, J., Ghisla, S., Beyer, P., and Einsle, O. (2017).
   Structure of phytoene desaturase provides insights into herbicide binding and reaction mechanisms involved in carotene desaturation.
   Structure 25: 1222–1232.e3. [PubMed]
5. Bücherl, C.A., Jarsch, I.K., Schudoma, C., Segonzac, C., Mbengue, M., Robatzek, S., MacLean, D., Ott, T., and Zipfel, C. (2017).
   Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains.
   Elife 6: e25114. [PubMed]
6. Capozzi, F., Adamo, P., Di Palma, A., Aboal, J.R., Bargagli, R., Fernandez, J.A., Lopez Mahia, P., Reski, R., Tretiach, M., Spagnuolo, V., and Giordano, S. (2017).
   Sphagnum palustre clone vs native Pseudoscleropodium purum: A first trial in the field to validate the future of the moss bag technique.
   Environ. Pollut., 225: 323–328. [PubMed]
7. Chayut, N., Yuan, H., Ohali, S., Meir, A., Sa'ar, U., Tzuri, G., Zheng, Y., Mazourek, M., Gepstein, S., Zhou, X., Portnoy, V., Lewinsohn, E., Schaffer, A.A., Katzir, N., Fei, Z., Welsch, R., Li, L., Burger, J., and Tadmor, Y. (2017).
   Distinct mechanisms of the ORANGE protein in controlling carotenoid flux.
   Plant Physiol. 173: 376–389. [PubMed]
8. Dahlke, R.I., Fraas, S., Ullrich, K.K., Heinemann, K., Romeiks, M., Rickmeyer, T., Klebe, G., Palme, K., Lüthen, H., and Steffens, B. (2017)
   Protoplast swelling and hypocotyl growth depend on different auxin signaling pathways.
   Plant Physiol. 175: 982–994. [PubMed]
9. Decker, E.L., Alder, A., Hunn, S., Ferguson, J., Lehtonen, M.T., Scheler, B., Kerres, K.L., Wiedemann, G., Safavi-Rizi, V., Nordzieke, S., Balakrishna, A., Baz, L., Avalos, J., Valkonen, J.P.T., Reski, R., and Al-Babili, S. (2017)
   Strigolactone biosynthesis is evolutionarily conserved, regulated by phosphate starvation and contributes to resistance against phytopathogenic fungi in a moss, Physcomitrella patens.
   New Phytol. 216: 455–468. [PubMed]
10. Enderle, B., Sheerin, D.J., Paik, I., Kathare, P.K., Schwenk, P., Klose, C., Ulbrich, M.H., Huq, E., and Hiltbrunner, A. (2017).
    PCH1 and PCHL promote photomorphogenesis in plants by controlling phytochrome B dark reversion.
    Nat. Commun. 8: 2221. [PubMed]
11. Georg, J., Kostova, G., Vuorijoki, L., Schön, V., Kadowaki, T., Huokko, T., Baumgartner, D., Müller, M., Klähn, S., Allahverdiyeva, Y., Hihara, Y., Futschik, M.E.. Aro, E.-M., and Hess, W.R. (2017).
    Acclimation of oxygenic photosynthesis to iron starvation is controlled by the sRNA IsaR1.
    Curr. Biol. 27: 1425–1436. [PubMed]
    
12. van Gessel, N., Lang, D., and Reski, R. (2017).
    Genetics and genomics of Physcomitrella patens.
    In Plant Cell Biology, S. Assmann and B. Liu, eds (Springer New York: New York, NY), pp. 1–32. doi: 10.1007/978-1-4614-7881-2_22-1
13. Grüning, B.A., Fallmann, J., Yusuf, D., Will, S., Erxleben, A., Eggenhofer, F., Houwaart, T., Batut, B., Videm, P., Bagnacani, A., Wolfien, M., Lott, S.C., Hoogstrate, Y., Hess, W.R., Wolkenhauer, O., Hoffmann, S., Akalin, A., Ohler, U., Stadler, P.F., and Backofen, R. (2017)
    The RNA workbench: best practices for RNA and high-throughput sequencing bioinformatics in Galaxy.
    Nucleic Acids Res. 45: W560–W566. [PubMed]
14. Gütle, D.D., Roret, T., Hecker, A., Reski, R., and Jacquot, J.-P. (2017).
    Dithiol disulphide exchange in redox regulation of chloroplast enzymes in response to evolutionary and structural constraints.
    Plant Sci. 255: 1–11. [PubMed]
15. Häffner, K., Parsons, J., Bohlender, L.L., Hoernstein, S., Niederkrüger, H., Fode, B., Busch, A., Krieghoff, N., Koch, J., Schaaf, A., Frischmuth, T., Zipfel, P.F., Pohl, M., Reski, R., Decker, E.L., and Michelfelder, S. (2017).
    Treatment of experimental C3 Glomerulopathy by human complement factor H produced in glycosylation-optimized Physcomitrella patens.
    Mol. Immunol. 89: 120. doi: 10.1016/j.molimm.2017.06.050
16. Hagemann, M. and Hess, W.R. (2017).
    Systems and synthetic biology for the biotechnological application of cyanobacteria.
    Curr. Opin. Biotechnol. 49: 94–99. [PubMed]
17. Heilmann, B., Hakkila, K., Georg, J., Tyystjärvi, T., Hess, W.R., Axmann, I.M., and Dienst, D. (2017).
    6S RNA plays a role in recovery from nitrogen depletion in Synechocystis sp. PCC 6803.
    BMC Microbiol. 17: 229. [PubMed]
18. Heinz, E., Girke, T., Scheffler, J., Da Costa E Silva, O., Schmidt, H., Zähringer, U., and Reski, R. (2017)
    Plants expressing delta 6-desaturase genes and oils from these plants containing PUFAS and method for producing unsaturated fatty acids.
    Patent US 09611441.
19. Horst, N.A. and Reski, R. (2017).
    Microscopy of Physcomitrella patens sperm cells.
    Plant Methods 13: 33. [PubMed]
20. Johnson, G.R., Kangas, J.D., Dovzhenko, A., Trojok, R., Voigt, K., Majarian, T.D., Palme, K., and Murphy, R.F. (2017).
    A method for characterizing phenotypic changes in highly variable cell populations and its application to high content screening of Arabidopsis thaliana protoplasts.
    Cytometry. A, 91: 326–335. [PubMed]
21. Kirsch, F., Pade, N., Klähn, S., Hess, W.R., and Hagemann, M. (2017).
    The glucosylglycerol-degrading enzyme GghA is involved in acclimation to fluctuating salinities by the cyanobacterium Synechocystis sp. strain PCC 6803.
    Microbiology 163: 1319–1328. [PubMed]
22. Kopka, J., Schmidt, S., Dethloff, F., Pade, N., Berendt, S., Schottkowski, M., Martin, N., Dühring, U., Kuchmina, E., Enke, H., Kramer, D., Wilde, A., Hagemann, M., and Friedrich, A. (2017).
    Systems analysis of ethanol production in the genetically engineered cyanobacterium Synechococcus sp. PCC 7002.
    Biotechnol. Biofuels 10: 56. [PubMed]
23. Koschmieder, J., Fehling-Kaschek, M., Schaub, P., Ghisla, S., Brausemann, A., Timmer, J., and Beyer, P. (2017).
    Plant-type phytoene desaturase: Functional evaluation of structural implications.
    PLoS one 12: e0187628. [PubMed]
24. Kuchmina, E., Klähn, S., Jakob, A., Bigott, W., Enke, H., Dühring, U., and Wilde, A. (2017)
    Ethylene production in Synechocystis sp. PCC 6803 promotes phototactic movement.
    Microbiology (Reading, Engl.), doi: 10.1099/mic.0.000564. [PubMed]
25. Lavrekha, V.V., Pasternak, T., Ivanov, V.B., Palme, K., and Mironova, V.V. (2017).
    3D analysis of mitosis distribution highlights the longitudinal zonation and diarch symmetry in proliferation activity of the Arabidopsis thaliana root meristem.
    Plant J. 92: 834–845. [PubMed]
26. Lott, S.C., Wolfien, M., Riege, K., Bagnacani, A., Wolkenhauer, O., Hoffmann, S., and Hess, W.R. (2017).
    Customized workflow development and data modularization concepts for RNA-Sequencing and metatranscriptome experiments.
    J. Biotechnol. 261: 85–96. [PubMed]
27. Michelfelder, S., Parsons, J., Bohlender, , L.L., Hoernstein, S.N.W., Niederkrüger, H., Busch, A., Krieghoff, N., Koch, J., Fode, B., Schaaf, A., Frischmuth, T., Pohl, M., Zipfel, P.F., Reski, R., Decker, E.L.^*, and Häffner, K.^* (2017)
    Moss-produced, glycosylation-optimized human factor H for therapeutic application in complement disorders.
    J. Am. Soc. Nephrol. 28: 1462–1474. [PubMed]
28. Miller, D.R., Pfreundt, U., Elifantz, H., Hess, W.R., and Berman-Frank, I. (2017).
    Microbial metatranscriptomes from the thermally stratified Gulf of Aqaba/Eilat during summer.
    Mar. Genomics 32: 23–26. [PubMed]
29. Mironova, V., Teale, W., Shahriari, M., Dawson, J., and Palme, K. (2017).
    The systems biology of auxin in developing embryos.
    Trends Plant Sci. 22: 225–235. [PubMed]
30. Mueller, S.J., Hoernstein, S.N., and Reski, R. (2017)
    Approaches to characterize organelle, compartment, or structure purity.
    Methods Mol. Biol. 1511: 13–28. [PubMed]
31. Mueller, S.J., Hoernstein, S.N.W., and Reski, R. (2017).
    The mitochondrial proteome of the moss Physcomitrella patens.
    Mitochondrion 33: 38–44. [PubMed]
32. Ott, T. (2017).
    Membrane nanodomains and microdomains in plant-microbe interactions.
    Curr. Opin. Plant Biol. 31: 82–88. [PubMed]
33. Pasternak, T., Haser, T., Falk, T., Ronneberger, O., Palme, K., and Otten, L. (2017).
    A 3D digital atlas of the Nicotiana tabacum root tip and its use to investigate changes in the root apical meristem induced by the Agrobacterium 6b oncogene.
    Plant J. 92: 31–42. [PubMed]
34. Perrin, F., Hartmann, L., Dubois-Laurent, C., Welsch, R., Huet, S., Hamama, L., Briard, M., Peltier, D., Gagné, S., and Geoffriau, E. (2017).
    Carotenoid gene expression explains the difference of carotenoid accumulation in carrot root tissues.
    Planta 245: 737–747. [PubMed]
35. Pfreundt, U., Spungin, D., Hou, S., Voß, B., Berman-Frank, I., and Hess, W.R. (2017).
    Genome of a giant bacteriophage from a decaying Trichodesmium bloom.
    Mar. Genomics., 33: 21–25. [PubMed]
36. Possart, A.^*,#, Xu, T.^*, Paik, I., Hanke, S., Keim, S., Hermann, H.-M., Wolf, L., Hiss, M., Becker, C., Huq, E., Rensing, S.A., and Hiltbrunner, A.^# (2017).
    Characterization of phytochrome interacting factors from the moss Physcomitrella patens illustrates conservation of phytochrome signaling modules in land plants.
    Plant Cell 29: 310–330. [PubMed]
37. Renault, H., Alber, A., Horst, N.A., Basilio Lopes, A. Fich, E.A., Kriegshauser, L., Wiedemann, G., Ullmann, P., Herrgott, L., Erhardt, M., Pineau, E., Ehlting, J., Schmitt, M., Rose, J.K., Reski, R., and Werck-Reichhart, D. (2017).
    A phenol-enriched cuticle is ancestral to lignin evolution in land plants.
    Nat. Commun. 8: 14713. [PubMed]
38. Reimann, V., Alkhnbashi, O.S., Saunders, S.J., Scholz, I., Hein, S., Backofen, R., and Hess, W.R. (2017).
    Structural constraints and enzymatic promiscuity in the Cas6-dependent generation of crRNAs.
    Nucleic Acids Res. 45: 915–925. [PubMed]
39. Roodbarkelari, F., and Groot, E.P. (2017)
    Regulatory function of homeodomain-leucine zipper (HD-ZIP) family proteins during embryogenesis.
    New Phytol. 213: 95–104. [PubMed]
40. Ruprecht, C., Proost, S., Hernandez-Coronado, M., Ortiz-Ramirez, C., Lang, D., Rensing, S.A., Becker, J.D., Vandepoele, K., and Mutwil, M. (2017)
    Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules.
    Plant J. 90: 447–465. [PubMed]
41. Schaub, P., Wüst, F., Koschmieder, J., Yu, Q., Virk, P., Tohme, J., and Beyer, P. (2017).
    Nonenzymatic β-carotene degradation in provitamin A-biofortified crop plants.
    J. Agric. Food Chem. 65: 6588–6598. [PubMed]
42. Schuergers, N., Mullineaux, C.W., and Wilde, A. (2017).
    Cyanobacteria in motion.
    Curr. Opin. Plant Biol. 37: 109–115. [PubMed]
43. Schuette, S., Piatkowski, B., Corley, A., Lang, D., and Geisler, M. (2015)
    Predicted protein-protein interactions in the moss Physcomitrella patens: a new bioinformatic resource.
    BMC Bioinformatics 16: 89. [PubMed]
44. Sheerin, D.J. and Hiltbrunner, A. (2017).
    Molecular mechanisms and ecological function of far-red light signalling.
    Plant, Cell Environ., 11: 2509–2529. [PubMed]
45. Srikumar, A., Krishna, P.S., Sivaramakrishna, D., Kopfmann, S., Hess, W.R., Swamy, M.J., Lin-Chao, S., and Prakash, J.S.S. (2017).
    The Ssl2245-Sll1130 toxin-antitoxin system mediates heat-induced programmed cell death in Synechocystis sp. PCC6803.
    J. Biol. Chem. 292: 4222–4234. [PubMed]
46. Szövényi, P., Ullrich, K.K., Rensing, S.A., Lang, D., van Gessel, N., Stenøien, H.K., Conti, E., and Reski, R. (2017).
    Selfing in haploid plants and efficacy of selection: Codon usage bias in the model moss Physcomitrella patens.
    Genome Biol. Evol. 9: 1528–1546. [PubMed]
47. Ueda, M., Aichinger, E., Gong, W., Groot, E., Verstraeten, I., Vu, L.D., De Smet, I., Higashiyama, T., Umeda, M., and Laux, T. (2017).
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev. 31: 617–627. [PubMed]
48. Viczian, A., Klose, C., Ádám, É., and Nagy, F. (2017).
    New insights of red light-induced development.
    Plant, Cell Environ. 11: 2457–2468. [PubMed]
49. Wilde, A. and Mullineaux, C.W. (2017).
    Light-controlled motility in prokaryotes and the problem of directional light perception.
    FEMS Microbiol. Rev. 41: 900–922. [PubMed]
50. Xu, T. and Hiltbrunner, A. (2017).
    PHYTOCHROME INTERACTING FACTORs from Physcomitrella patens are active in Arabidopsis and complement the pif quadruple mutant.
    Plant Signal Behav. 12: e1388975. [PubMed]
51. Zhang, Z., Tucker, E., Hermann, M., and Laux, T. (2017).
    A molecular framework for the embryonic initiation of shoot meristem stem cells.
    Dev. Cell 40: 264–277.e4. [PubMed]
52. Zhao, X., Bramsiepe, J., Van Durme, M., Komaki, S., Prusicki, M.A., Maruyama, D., Forner, J., Medzihradszky, A., Wijnker, E., Harashima, H., Lu, Y., Schmidt, A., Guthörl, D., Logroño, R.S., Guan, Y., Pochon, G., Grossniklaus, U., Laux, T., Higashiyama, T., Lohmann, J.U., Nowack, M.K., and Schnittger, A. (2017).
    RETINOBLASTOMA RELATED1 mediates germline entry in Arabidopsis.
    Science 356: eaaf6532. [PubMed]
53. Zhou, X., Zheng, R., Liu, G., Xu, Y., Zhou, Y., Laux, T., Zhen, Y., Harding, S.A., Shi, J., and Chen, J. (2017)
    Desiccation treatment and endogenous IAA levels are key factors influencing high frequency somatic embryogenesis in Cunninghamia lanceolata (Lamb.) hook.
    Front Plant Sci. 8: 2054. [PubMed]
54. Zhu, T., Hou, S., Lu, X., and Hess, W.R. (2017).
    Draft genome sequences of nine cyanobacterial strains from diverse habitats.
    Genome Announc. 5: e01676-16. [PubMed]

Publications 2016

(in alphabetical order)

1. Ali, L., Spiess, M., Wobser, D., Rodriguez, M., Blum, H.E., and Sakιnç, T. (2016)
   Identification and functional characterization of the putative polysaccharide biosynthesis protein (CapD) of Enterococcus faecium U0317.
   Infect. Genet. Evol. 37: 215–224. [PubMed]
2. Asgharzadeh, P., Özdemir, B., Müller, S.J., Reski, R., and Röhrle, O. (2016).
   Analysis of confocal microscopy image data of Physcomitrella chloroplasts to reveal adaptation principles leading to structural stability at the nanoscale.
   PAMM 16: 69–70. doi: 10.1002/pamm.201610023
3. Asgharzadeh, P., Özdemir, B., Müller, S.J., Röhrle, O., and Reski, R. (2016).
   Analysis of Physcomitrella chloroplasts to reveal adaptation principles leading to structural stability at the nano-scale.
   In Biomimetic Research for Architecture and Building Construction: Biological Design and Integrative Structures, J. Knippers, K.G. Nickel, and T. Speck, eds (Springer International Publishing: Cham), pp. 261–275. doi: 10.1007/978-3-319-46374-2_13
4. Álvarez, D., Voss, B., Maass, D., Wüst, F., Schaub, P., Beyer, P., and Welsch, R. (2016).
   5’UTR-mediated translational control of splice variants of phytoene synthase.
   Plant Physiol., 172: 2314–2326. [PubMed]
5. Baumgartner, D., Kopf, M., Klähn, S., Steglich, C., and Hess, W.R. (2016)
   Small proteins in cyanobacteria provide a paradigm for the functional analysis of the bacterial micro-proteome.
   BMC Microbiol. 16: 285. [PubMed]
6. Bruno, M., Koschmieder, J., Wuest, F., Schaub, P., Fehling-Kaschek, M., Timmer, J., Beyer, P., and Al-Babili, S. (2016).
   Enzymatic study on AtCCD4 and AtCCD7 and their potential to form acyclic regulatory metabolites.
   J. Exp. Bot. 67: 5993–6005. [PubMed]
7. Capozzi, F., Giordano, S., Aboal, J.R.,Adamo, P., Bargagli, R., Boquete, T., Di Palma, A., Real, C., Reski, R., Spagnuolo, V., Steinbauer, K., Tretiach, M., Varela, Z., Zechmeister, H., and Fernandez J.A. (2016).
   Best options for the exposure of traditional and innovative moss bags: A systematic evaluation in three European countries.
   Environ. Pollut. 214: 362–373. [PubMed]
8. Chater, C.C., Caine, R.S., Tomek, M., Wallace, S., Kamisugi, Y., Cuming, A.C., Lang, D., MacAlister, C.A., Casson, S., Bergmann, D.C., Decker, E.L., Frank, W., Gray, J.E., Fleming, A., Reski, R.^*, and Beerling, D.J.^* (2016).
   Origin and function of stomata in the moss Physcomitrella patens.
   Nat. Plants 2: 16179. [PubMed]
9. Chuprov-Netochin, R., Neskorodov, Y., Marusich, E., Mishutkina, Y., Volynchuk, P., Leonov, S., Skryabin, K., Ivashenko, A., Palme, K., and Touraev, A. (2016).
   Novel small molecule modulators of plant growth and development identified by high-content screening with plant pollen.
   BMC Plant Biol. 16: 192. [PubMed]
10. Dalal, J., Lewis, D.R., Tietz, O., Brown, E.M., Brown, C.S., Palme, K., Muday, G.K., and Sederoff, H.W. (2016).
    ROSY1, a novel regulator of gravitropic response is a stigmasterol binding protein.
    J. Plant Physiol. 196-197: 28–40. [PubMed]
11. de Porcellinis, A.J., Klähn, S., Rosgaard, L., Kirsch, R., Gutekunst, K., Georg, J., Hess, W.R., and Sakuragi, Y. (2016).
    The non-coding RNA Ncr0700/PmgR1 is required for photomixotrophic growth and the regulation of glycogen accumulation in the cyanobacterium Synechocystis sp. PCC 6803.
    Plant Cell Physiol. 57: 2091–2103. [PubMed]
12. Díaz-Sánchez, V., Limón, M.C., Schaub, P., Al-Babili, S., and Avalos, J. (2016)
    A RALDH-like enzyme involved in Fusarium verticillioides development.
    Fungal Genet. Biol. 86: 20–32. [PubMed]
13. Di Palma, A., Crespo Pardo, D., Spagnuolo, V., Adamo, P., Bargagli, R., Cafasso, D., Capozzi, F., Aboal, J.R., Gonzalez, A.G., Pokrovsky, O., Beike, A.K., Reski, R., Tretiach, M., Varela, Z., and Giordano S. (2016).
    Molecular and chemical characterization of a Sphagnum palustre clone: Key steps towards a standardized and sustainable moss bag technique.
    Ecol. Indic. 71: 388–397. doi: 10.1016/j.ecolind.2016.06.044
14. Dolzblasz, A., Nardmann, J., Clerici, E., Causier, B., van der Graaff, E., Chen, J., Davies, B., Werr, W., and Laux, T. (2016).
    Stem cell regulation by Arabidopsis WOX genes.
    Mol. Plant 9: 1028–1039. [PubMed]
15. González, A.G., Jimenez-Villacorta, F., Beike, A.K., Reski, R., Adamo, P., and Pokrovsky, O.S. (2016).
    Chemical and structural characterization of copper adsorbed on mosses (Bryophyta).
    J. Hazard. Mater. 308: 343–354. [PubMed]
16. Gonzalez, A.G., Pokrovsky, O.S., Beike, A.K., Reski, R., Di Palma, A., Adamo, P., Giordano, S., and Fernandez, J.A. (2016).
    Metal and proton adsorption capacities of natural and cloned Sphagnum mosses.
    J. Colloid Interface Sci. 461: 326–334. [PubMed]
17. Gütle, D.D., Roret, T., Müller, S.J., Couturier, J., Lemaire, S.D., Hecker, A., Dhalleine, T., Buchanan, B.B., Reski, R., Einsle, O., and Jacquot, J.-P. (2016).
    Chloroplast FBPase and SBPase are thioredoxin-linked enzymes with similar architecture but different evolutionary histories.
    Proc. Natl. Acad. Sci. U. S. A. 113: 6779–6784. [PubMed]
18. Groot, E.P. and Laux, T. (2016).
    Ageing: How do long-lived plants escape mutational meltdown?
    Curr. Biol. 26: R530–R532. [PubMed]
19. Hoernstein, S.N.W., Mueller, S.J., Fiedler, K., Schuelke, M., Vanselow, J.T., Schuessele, C., Lang, D., Nitschke, R., Igloi, G.L., Schlosser, A., and Reski, R. (2016).
    Identification of targets and interaction partners of arginyl-tRNA protein transferase in the moss Physcomitrella patens.
    Mol. Cell. Proteomics, 15: 1808–1822. [PubMed]
20. Horst, N.A., Katz, A., Pereman, I., Decker, E.L., Ohad, N., and Reski, R. (2016).
    A single homeobox gene triggers phase transition, embryogenesis and asexual reproduction.
    Nat. Plants 2: 15209. [PubMed]
21. Horst, N.A. and Reski, R. (2016).
    Alternation of generations - unravelling the underlying molecular mechanism of a 165-year old botanical observation.
    Plant Biol. (Stuttg). 18: 549–551. [PubMed]
22. Hou, S., Pfreundt, U., Miller, D., Berman-Frank, I., and Hess, W.R. (2016)
    mdRNA-Seq analysis of marine microbial communities from the northern Red Sea.
    Sci. Rep. 6: 35470. [PubMed]
23. Jung, J.-H.^*, Domijan, M.^*, Klose, C.^*, Biswas, S.^*, Ezer, D.^*, Gao, M., Khattak, A.K., Box, M.S., Charoensawan, V., Cortijo, S., Kumar, M., Grant, A., Locke, J.C.W., Schäfer, E., Jaeger, K.E., and Wigge, P.A. (2016).
    Phytochromes function as thermosensors in Arabidopsis.
    Science, 354: 886–889. [PubMed]
24. Kadowaki, T., Nagayama, R., Georg, J., Nishiyama, Y., Wilde, A., Hess, W.R., and Hihara, Y. (2016).
    A feed-forward loop consisting of the response regulator RpaB and the small RNA PsrR1 controls light acclimation of photosystem I gene expression in the cyanobacterium Synechocystis sp. PCC 6803.
    Plant Cell Physiol. 57: 813–823. [PubMed]
25. Kirchenbauer, D., Viczián, A., Ádám, É., Hegedűs, Z., Klose, C., Leppert, M., Hiltbrunner, A., Kircher, S., Schäfer, E., and Nagy, F. (2016).
    Characterization of photomorphogenic responses and signaling cascades controlled by phytochrome-A expressed in different tissues.
    New Phytol. 211: 584–598. [PubMed]
26. Kircher, S. and Schopfer, P. (2016).
    Priming and positioning of lateral roots in Arabidopsis. An approach for an integrating concept.
    J. Exp. Bot. 67: 1411–1420. [PubMed]
27. Klotz, A., Georg, J., Bučinská, L., Watanabe, S., Reimann, V., Januszewski, W., Sobotka, R., Jendrossek, D., Hess, W.R., and Forchhammer, K. (2016)
    Awakening of a dormant cyanobacterium from nitrogen chlorosis reveals a genetically determined program.
    Curr. Biol. 26: 2862–2872. [PubMed]
28. Kopfmann, S., Roesch, S.K., and Hess, W.R. (2016).
    Type II toxin-antitoxin systems in the unicellular cyanobacterium Synechocystis sp. PCC 6803.
    Toxins (Basel) 8: 228. [PubMed]
29. Lang, D., van Gessel, N., Ullrich, K.K., and Reski, R. (2016).
    The genome of the model moss Physcomitrella patens.
    Advances in Botanical Research 78, 97–140. doi: 10.1016/bs.abr.2016.01.004
30. Legris, M., Klose, C., Burgie, E.S., Costigliolo, C., Neme, M., Hiltbrunner, A., Wigge, P.A., Schäfer, E., Vierstra, R.D., and Casal, J.J. (2016).
    Phytochrome B integrates light and temperature signals in Arabidopsis.
    Science, 354: 897–900. [PubMed]
31. Lin, T.-F., Saiga, S., Abe, M., and Laux, T. (2016).
    OBE3 and WUS interaction in shoot meristem stem cell regulation.
    PLoS One 11: e0155657. [PubMed]
32. Meinert, T., Tietz, O., Palme, K.J., and Rohrbach, A. (2016).
    Separation of ballistic and diffusive fluorescence photons in confocal light-sheet microscopy of Arabidopsis roots.
    Sci. Rep. 6: 30378. [PubMed]
33. Menon, C., Sheerin, D.J., and Hiltbrunner, A. (2016).
    SPA proteins: SPAnning the gap between visible light and gene expression.
    Planta 244: 297–312. [PubMed]
34. Müller, S.J., Gütle, D.D., Jacquot, J.-P., and Reski, R. (2016).
    Can mosses serve as model organisms for forest research?
    Ann. For. Sci. 73: 135–146. doi: 10.1007/s13595-015-0468-7
35. Nguyen, L., Lang, D., van Gessel, N., Beike, A.K., Menges, A., Reski, R., and Roth-Nebelsick, A. (2016).
    Evolutionary processes as models for exploratory design.
    In Biomimetic Research for Architecture and Building Construction: Biological Design and Integrative Structures, J. Knippers, K.G. Nickel, and T. Speck, eds (Springer International Publishing: Cham), pp. 295–318. doi: 10.1007/978-3-319-46374-2_15
36. Ohbayashi, R., Akai, H., Yoshikawa, H., Hess, W.R., and Watanabe, S. (2016).
    A tightly inducible riboswitch system in Synechocystis sp. PCC 6803.
    J. Gen. Appl. Microbiol. 62: 154–159. [PubMed]
37. Omelyanchuk, N.A., Kovrizhnykh, V. V, Oshchepkova, E.A., Pasternak, T., Palme, K., and Mironova, V. V (2016).
    A detailed expression map of the PIN1 auxin transporter in Arabidopsis thaliana root.
    BMC Plant Biol. 16 Suppl 1: 5. [PubMed]
38. Orf, I., Schwarz, D., Kaplan, A., Kopka, J., Hess, W.R., Hagemann, M., and Klähn, S. (2016).
    CyAbrB2 contributes to the transcriptional regulation of low CO₂ acclimation in Synechocystis sp. PCC 6803.
    Plant Cell Physiol. 57: 2232–2243. [PubMed]
39. Pade, N., Erdmann, S., Enke, H., Dethloff, F., Dühring, U., Georg, J., Wambutt, J., Kopka, J., Hess, W.R., Zimmermann, R., Kramer, D., and Hagemann, M. (2016).
    Insights into isoprene production using the cyanobacterium Synechocystis sp. PCC 6803.
    Biotechnol. Biofuels 9: 89. [PubMed]
40. Pade, N., Michalik, D., Ruth, W., Belkin, N., Hess, W.R., Berman-Frank, I., and Hagemann, M. (2016)
    Trimethylated homoserine functions as the major compatible solute in the globally significant oceanic cyanobacterium Trichodesmium.
    Proc. Natl. Acad. Sci. U.S.A. 113: 13191–13196. [PubMed]
41. Palme, K. and Schopfer, P. (2016).
    Inhibition of cell expansion by rapid ABP1-mediated auxin effect on microtubules? A critical comment.
    Plant Physiol. 170: 235. [PubMed]
42. Palme, K., Teale, W., and Dovzhenko, A. (2016).
    Plant signaling: HY5 synchronizes resource supply.
    Curr. Biol. 26: R328–R329. [PubMed]
43. Pereman, I., Mosquna, A., Katz, A., Wiedemann, G., Lang, D., Decker, E.L., Tamada, Y., Ishikawa, T., Nishiyama, T., Hasebe, M., Reski, R., and Ohad, N. (2016).
    The polycomb group protein CLF emerges as a specific tri-methylase of H3K27 regulating gene expression and development in Physcomitrella patens.
    Biochim. Biophys. Acta 1859: 860–70. [PubMed]
44. Rensing, S.A., Ick, J., Fawcett, J.A., Lang, D., Zimmer, A., Van de Peer, Y., and Reski, R. (2016).
    Erratum to: An ancient genome duplication contributed to the abundance of metabolic genes in the moss Physcomitrella patens.
    BMC Evol. Biol. 16: 184. [PubMed]
45. Rensing, S.A., Sheerin, D.J., and Hiltbrunner, A. (2016).
    Phytochromes: more than meets the eye.
    Trends Plant Sci. 21: 543–546. [PubMed]
46. Rosales-Mendoza, S., Salazar-González, J.A., Decker, E.L., and Reski, R. (2016).
    Implications of plant glycans in the development of innovative vaccines.
    Expert Rev. Vaccines, 15: 915–925. [PubMed]
47. Ruiz-Sola, M.Á., Coman, D., Beck, G., Barja, M.V., Colinas, M., Graf, A., Welsch, R., Rütimann, P., Bühlmann, P., Bigler, L., Gruissem, W., Rodríguez-Concepción, M. and Vranová, E. (2016).
    Arabidopsis GERANYLGERANYL DIPHOSPHATE SYNTHASE 11 is a hub isozyme required for the production of most photosynthesis-related isoprenoids.
    New Phytol. 209: 252–264. [PubMed]
48. Samodelov, S.L., Beyer, H.M., Guo, X., Augustin, M., Jia, K.-P., Baz, L., Ebenhöh, O., Beyer, P., Weber, W., Al-Babili, S., and Zurbriggen, M.D. (2016).
    StrigoQuant: A genetically encoded biosensor for quantifying strigolactone activity and specificity.
    Sci. Adv. 2: e1601266. [PubMed]
49. Sanchez Carranza, A.P., Singh, A., Steinberger, K., Panigrahi, K., Palme, K., Dovzhenko, A., and Dal Bosco, C. (2016).
    Hydrolases of the ILR1-like family of Arabidopsis thaliana modulate auxin response by regulating auxin homeostasis in the endoplasmic reticulum.
    Sci. Rep. 6: 24212. [PubMed]
50. Schuergers, N., Lenn, T., Kampmann, R., Meissner, M. V, Esteves, T., Temerinac-Ott, M., Korvink, J.G., Lowe, A.R., Mullineaux, C.W., and Wilde, A. (2016).
    Cyanobacteria use micro-optics to sense light direction.
    Elife 5: e12620. [PubMed]
51. Schuessele, C., Hoernstein, S.N.W., Mueller, S.J., Rodriguez-Franco, M., Lorenz, T., Lang, D., Igloi, G.L., and Reski, R. (2016).
    Spatio-temporal patterning of arginyl-tRNA protein transferase (ATE) contributes to gametophytic development in a moss.
    New Phytol. 209: 1014–1027. [PubMed]
52. Stevenson, S.R., Kamisugi, Y., Trinh, C.H., Schmutz, J., Jenkins, J.W., Grimwood, J., Muchero, W., Tuskan, G.A., Rensing, S.A., Lang, D., Reski, R., Melkonian, M., Rothfels, C.J., Li, F.W., Larsson, A., Wong, G.K., Edwards, T.A., and Cuming, A.C. (2016).
    Genetic analysis of Physcomitrella patens identifies ABSCISIC ACID NON-RESPONSIVE, a regulator of ABA responses unique to basal land plants and required for desiccation tolerance.
    Plant Cell 28: 1310–1327. [PubMed]
53. Wang, P., Cheng, T., Lu, M., Liu, G., Li, M., Shi, J., Lu, Y., Laux, T., and Chen, J. (2016).
    Expansion and functional divergence of AP2 group genes in spermatophytes determined by molecular evolution and Arabidopsis mutant analysis.
    Front. Plant Sci. 7: 1383. [PubMed]
54. Weimer, A.K., Biedermann, S., Harashima, H., Roodbarkelari, F., Takahashi, N., Foreman, J., Guan, Y., Pochon, G., Heese, M., Van Damme, D., Sugimoto, K., Koncz, C., Doerner, P., Umeda, M., and Schnittger, A. (2016)
    The plant-specific CDKB1-CYCB1 complex mediates homologous recombination repair in Arabidopsis.
    EMBO J. 35: 2068–2086. [PubMed]
55. Wilde, A. and Hihara, Y. (2016).
    Transcriptional and posttranscriptional regulation of cyanobacterial photosynthesis.
    Biochim. Biophys. Acta 1857: 296–308. [PubMed]

Publications 2015

(in alphabetical order)

1. Beike, A.K., Lang, D., Zimmer, A.D., Wüst, F., Trautmann, D., Wiedemann, G., Beyer, P., Decker, E.L., and Reski, R. (2015)
   Insights from the cold transcriptome of Physcomitrella patens: global specialization pattern of conserved transcriptional regulators and identification of orphan genes involved in cold acclimation.
   New Phytol. 205: 869–881. [PubMed]
2. Beike, A.K., Spagnuolo, V., Lüth, V., Steinhart, F., Ramos-Gómez, J., Krebs, M., Adamo, P., Rey-Asensio, A.I., Angel Fernández, J., Giordano, S., Decker, E.L., and Reski, R. (2015).
   Clonal in vitro propagation of peat mosses (Sphagnum L.) as novel green resources for basic and applied research.
   Plant Cell Tissue Organ Cult. 120: 1037–1049. [PubMed]
3. Beyer, H.M., Juillot, S., Herbst, K., Samodelov, S.L., Müller, K., Schamel, W.W., Römer, W., Schäfer, E., Nagy, F., Strähle, U., Weber, W., and Zurbriggen, M.D. (2015)
   Red light-regulated reversible nuclear localization of proteins in mammalian cells and zebrafish.
   ACS Synth. Biol. 4: 951–958. [PubMed]
4. Bi, Z., Merl-Pham, J., Uehlein, N., Zimmer, I., Mühlhans, S., Aichler, M., Walch, A.K., Kaldenhoff, R., Palme, K., Schnitzler, J.-P., and Block, K. (2015).
   RNAi-mediated downregulation of poplar plasma membrane intrinsic proteins (PIPs) changes plasma membrane proteome composition and affects leaf physiology.
   J. Proteomics 128: 321–332. [PubMed]
5. Bittner, T., Nadler, S., Schulze, E., and Fischer-Iglesias, C. (2015).
   Two homolog wheat Glycogen Synthase Kinase 3/SHAGGY - like kinases are involved in brassinosteroid signaling.
   BMC Plant Biol. 15: 247. [PubMed]
6. Bruno, M., Beyer, P., and Al-Babili, S. (2015).
   The potato carotenoid cleavage dioxygenase 4 catalyzes a single cleavage of β-ionone ring-containing carotenes and non-epoxidated xanthophylls.
   Arch. Biochem. Biophys. 572: 126–133. [PubMed]
7. Chan, Y.W., Millard, A.D., Wheatley, P.J., Holmes, A.B., Mohr, R., Whitworth, A.L., Mann, N.H., Larkum, A.W., Hess, W.R., Scanlan, D.J., and Clokie, M.R. (2015)
   Genomic and proteomic characterization of two novel siphovirus infecting the sedentary facultative epibiont cyanobacterium Acaryochloris marina.
   Environ. Microbiol. 17: 4239–4252. [PubMed]
8. Concha-Graña, E., Muniategui-Lorenzo, S., De Nicola, F., Aboal, J.R., Rey-Asensio, A.I., Giordano, S., Reski, R., López-Mahía, P., and Prada-Rodríguez, D. (2015).
   Matrix solid phase dispersion method for determination of polycyclic aromatic hydrocarbons in moss.
   J. Chromatogr. A 7: 16–29. [PubMed]
9. Decker, E.L., Wiedemann, G., and Reski, R. (2015).
   Gene targeting for precision glyco-engineering: production of biopharmaceuticals devoid of plant-typical glycosylation in moss bioreactors.
   Methods Mol. Biol. 1321: 213–224. [PubMed]
10. Ditengou, F.A., Müller, A., Rosenkranz, M., Felten, J., Lasok, H., van Doorn, M.M., Legué, V., Palme, K., Schnitzler, J.P., and Polle, A. (2015)
    Volatile signalling by sesquiterpenes from ectomycorrhizal fungi reprogrammes root architecture.
    Nat. Commun. 6: 6279. [PubMed]
11. Gemmecker, S., Schaub, P., Koschmieder, J., Brausemann, A., Drepper, F., Rodriguez-Franco, M., Ghisla, S., Warscheid, B., Einsle, O., and Beyer, P. (2015).
    Phytoene desaturase from Oryza sativa: Oligomeric assembly, membrane association and preliminary 3D-analysis.
    PLoS One 10: e0131717. [PubMed]
12. Hajdu, A., Adam, E., Sheerin, D.J., Dobos, O., Bernula, P., Hiltbrunner, A., Kozma-Bognar, L., and Nagy, F. (2015).
    High-level expression and phosphorylation of phytochrome B modulates flowering time in Arabidopsis.
    Plant J. 83: 794–805. [PubMed]
13. Held, J., Gräber, K., Leubner-Metzger, G., Kunkel, T., Theilacker, C., Kramme, S., and Schmitt-Graeff, A. (2015)
    Photo quiz: mysterious objects in a pleural biopsy sample from a patient with recurrent pleural empyema.
    J. Clin. Microbiol. 53: 2005, 2393. [PubMed]
14. Klähn, S., Schaal, C., Georg, J., Baumgartner, D., Knippen, G., Hagemann, M., Muro-Pastor, A.M., and Hess, W.R. (2015).
    The sRNA NsiR4 is involved in nitrogen assimilation control in cyanobacteria by targeting glutamine synthetase inactivating factor IF7.
    Proc. Natl. Acad. Sci. 112: E6243–6252. [PubMed]
15. Klähn, S., Orf, I., Schwarz, D., Matthiessen, J.K., Kopka, J., Hess, W.R., and Hagemann, M. (2015)
    Integrated transcriptomic and metabolomic characterization of the low-carbon response using an ndhR mutant of Synechocystis sp. PCC 6803.
    Plant Physiol. 169: 1540–1556. [PubMed]
16. Klose, C., Venezia, F., Hussong, A., Kircher, S., Schäfer, E.*, and Fleck, C.* (2015).
    Systematic analysis of how phytochrome B dimerization determines its specificity.
    Nat. Plants 1: 15090. [PubMed]
17. Klose, C., Viczián, A., Kircher, S., Schäfer, E., and Nagy, F. (2015).
    Molecular mechanisms for mediating light-dependent nucleo/cytoplasmic partitioning of phytochrome photoreceptors.
    New Phytol. 206: 965–971. [PubMed]
18. Kopf, M. and Hess, W.R. (2015).
    Regulatory RNAs in photosynthetic cyanobacteria.
    FEMS Microbiol. Rev. 39: 301–315. [PubMed]
19. Kopf, M., Klähn, S., Scholz, I., Hess, W.R., and Voß, B. (2015).
    Variations in the non-coding transcriptome as a driver of inter-strain divergence and physiological adaptation in bacteria.
    Sci. Rep. 5: 9560. [PubMed]
20. Kopf, M., Möke, F., Bauwe, H., Hess, W.R., and Hagemann, M. (2015).
    Expression profiling of the bloom-forming cyanobacterium Nodularia CCY9414 under light and oxidative stress conditions.
    ISME J., doi: 10.1038/ismej.2015.16. [PubMed]
21. Lätari, K., Wüst, F., Hübner, M., Schaub, P., Beisel, K.G., Matsubara, S., Beyer, P., and Welsch, R. (2015).
    Tissue-specific apocarotenoid glycosylation contributes to carotenoid homeostasis in Arabidopsis leaves.
    Plant Physiol. 168: 1550–1562. [PubMed]
22. Lind, C., Dreyer, I., López-Sanjurjo, E.J., von Meyer, K., Ishizaki, K., Kohchi, T., Lang, D., Zhao, Y., Kreuzer, I., Al-Rasheid, K.A.S., Ronne, H., Reski, R., Zhu, J.-K., Geiger, D., and Hedrich, R. (2015).
    Stomatal guard cells co-opted an ancient ABA-dependent desiccation survival system to regulate stomatal closure.
    Curr. Biol. 25: 928–935. [PubMed]
23. Lott, S.C., Voß, B., Hess, W.R., and Steglich, C. (2015)
    CoVennTree: a new method for the comparative analysis of large datasets.
    Front. Genet. 6: 43. [PubMed]
24. Mueller, S.J., and Reski, R. (2015)
    Mitochondrial dynamics and the ER: the plant perspective.
    Front. Cell Dev. Biol. 3: 78. [PubMed]
25. Orf, I., Klähn, S., Schwarz, D., Frank, M., Hess, W.R., Hagemann, M., and Kopka, J. (2015)
    Integrated analysis of engineered carbon limitation in a quadruple CO₂/HCO₃^- uptake mutant of Synechocystis sp. PCC 6803.
    Plant Physiol. 169: 1787–1806. [PubMed]
26. Pasternak, T., Tietz, O., Rapp, K., Begheldo, M., Nitschke, R., Ruperti, B., and Palme, K. (2015).
    Protocol: an improved and universal procedure for whole-mount immunolocalization in plants.
    Plant Methods 11: 50. [PubMed]
27. Pfreundt, U., and Hess, W.R. (2015)
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